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contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA669701" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 30 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA669701 · 30 ✖

analysis 1

  • diamond · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1912642 1912642 PRJNA669701_P_NODE_93382_length_266_cov_1.595855_g92987_i0 PRJNA669701 93382 266 1.595855 4.2449743 Chordata 7711 Chordata Chordata 95.1 2.82e-23   NR XP_038646025.1 7830 g92987 i0 83.3 18.4172932330827 54 9 60.9 0 256 95 42 95 XP_038646025.1 60S ribosomal protein L39-like [Scyliorhinus canicula] diamond 4899 95.9 0.991657977059437 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
4463439 4463439 PRJNA669701_P_NODE_15044_length_609_cov_14.617537_g14656_i0 PRJNA669701 15044 609 14.617537 89.02080033 Oryctolagus cuniculus 9986 Chordata Chordata 209 5.74e-66   NR 3J0L_K 9986 g14656 i0 72.7 0.684729064039409 139 38 68.5 0 452 36 2 140 3J0L_K Chain K, Ribosomal protein S14 [Oryctolagus cuniculus] diamond 417 209 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
26891997 26891997 PRJNA669701_P_NODE_123841_length_246_cov_0.890173_g123446_i0 PRJNA669701 123841 246 0.890173 2.18982558 Apodemus speciosus 105296 Chordata Chordata 46.6 0.00174   NR GAB1300185.1 105296 g123446 i0 48.9 0.963414634146341 47 18 53.7 2 201 70 494 537 GAB1300185.1 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 [Apodemus speciosus] diamond 237 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
26935407 26935407 PRJNA669701_P_NODE_119722_length_247_cov_2.488506_g119327_i0 PRJNA669701 119722 247 2.488506 6.14660982 Fringillidae 9133 Chordata Chordata 53.5 1.25e-6   NR XP_050833355.1 9135 g119327 i0 38.8 4.97975708502024 67 40 80.2 1 245 48 65 131 XP_050833355.1 glutaredoxin 2 isoform X1 [Serinus canaria] diamond 1230 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Serinus Serinus canaria
27050135 27050135 PRJNA669701_P_NODE_20842_length_515_cov_3.398190_g20447_i0 PRJNA669701 20842 515 3.39819 17.5006785 Oryctolagus cuniculus 9986 Chordata Chordata 189 2.06e-58   NR 3J0L_K 9986 g20447 i0 72.8 0.728155339805825 125 34 72.8 0 375 1 2 126 3J0L_K Chain K, Ribosomal protein S14 [Oryctolagus cuniculus] diamond 375 189 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
27334677 27334677 PRJNA669701_P_NODE_76263_length_286_cov_2.755869_g75868_i0 PRJNA669701 76263 286 2.755869 7.88178534 Pelobates cultripes 61616 Chordata Chordata 140 1.63e-36   NR CAH2324607.1 61616 g75868 i0 68.8 5.85314685314685 93 29 97.6 0 5 283 348 440 CAH2324607.1 zinc finger MYM-type 1-like [Pelobates cultripes] diamond 1674 140 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates cultripes
27713832 27713832 PRJNA669701_P_NODE_128504_length_245_cov_0.895349_g128109_i0 PRJNA669701 128504 245 0.895349 2.19360505 Mus musculus 10090 Chordata Chordata 99 1.8e-23   NR XP_006511908.1 10090 g128109 i0 70.4 0.869387755102041 71 20 85.7 1 221 12 151 221 XP_006511908.1 U8 snoRNA-decapping enzyme isoform X2 [Mus musculus] diamond 213 99 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27757286 27757286 PRJNA669701_P_NODE_128964_length_245_cov_0.895349_g128569_i0 PRJNA669701 128964 245 0.895349 2.19360505 Felidae 9681 Chordata Chordata 44.3 0.0109   NR XP_025787978.1 9696 g128569 i0 43.1 2.49795918367347 51 28 61.2 1 77 226 6 56 XP_025787978.1 eyes absent homolog 2 [Puma concolor] diamond 612 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Puma Puma concolor
27776780 27776780 PRJNA669701_P_NODE_88224_length_272_cov_1.547739_g87829_i0 PRJNA669701 88224 272 1.547739 4.20985008 Mustela erminea 36723 Chordata Chordata 64.3 1.22e-9   NR XP_032201149.1 36723 g87829 i0 73.1 2.16176470588235 52 11 57.4 1 156 1 72 120 XP_032201149.1 WAS/WASL-interacting protein family member 1-like isoform X1 [Mustela erminea] diamond 588 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Mustela Mustela erminea
28483268 28483268 PRJNA669701_P_NODE_39746_length_375_cov_2.076159_g39351_i0 PRJNA669701 39746 375 2.076159 7.78559625 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 136 2.32e-36   NR CAK8598685.1 30338 g39351 i0 70.8 4.24 89 26 71.2 0 109 375 71 159 CAK8598685.1 Alanine--glyoxylate aminotransferase 2, mitochondrial [Bufotes viridis] diamond 1590 137 0.992700729927007 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28502846 28502846 PRJNA669701_P_NODE_71867_length_292_cov_1.799087_g71472_i0 PRJNA669701 71867 292 1.799087 5.25333404 Grus japonensis 30415 Chordata Chordata 80.5 3.72e-15   NR GAB0202683.1 30415 g71472 i0 62.7 0.606164383561644 59 22 60.6 0 178 2 568 626 GAB0202683.1 hypothetical protein GRJ2_002733900 [Grus japonensis] diamond 177 80.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
28692451 28692451 PRJNA669701_P_NODE_23847_length_481_cov_2.647059_g23452_i0 PRJNA669701 23847 481 2.647059 12.73235379 Staurois parvus 386267 Chordata Chordata 58.5 1.07e-7   NR CAI9533415.1 386267 g23452 i0 40 2.10810810810811 110 47 56.8 4 120 392 1 110 CAI9533415.1 unnamed protein product [Staurois parvus] diamond 1014 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28881570 28881570 PRJNA669701_P_NODE_103528_length_255_cov_1.532967_g103133_i0 PRJNA669701 103528 255 1.532967 3.90906585 Pleurodeles waltl 8319 Chordata Chordata 42 0.0293   NR KAJ1176677.1 8319 g103133 i0 31.5 0.858823529411765 73 37 70.6 2 75 254 41 113 KAJ1176677.1 hypothetical protein NDU88_001946 [Pleurodeles waltl] diamond 219 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
28976563 28976563 PRJNA669701_P_NODE_87668_length_273_cov_1.155000_g87273_i0 PRJNA669701 87668 273 1.155 3.15315 Rattus norvegicus 10116 Chordata Chordata 55.8 2.04e-8   NR EDM02634.1 10116 g87273 i0 100 0.285714285714286 26 0 28.6 0 83 6 1 26 EDM02634.1 rCG62345, partial [Rattus norvegicus] diamond 78 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
29134498 29134498 PRJNA669701_P_NODE_134969_length_243_cov_0.905882_g134574_i0 PRJNA669701 134969 243 0.905882 2.20129326 Mus musculus 10090 Chordata Chordata 74.3 1.51e-14   NR EDL12236.1 10090 g134574 i0 65.3 0.604938271604938 49 17 60.5 0 240 94 28 76 EDL12236.1 mCG146134, partial [Mus musculus] diamond 147 74.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
29304094 29304094 PRJNA669701_P_NODE_45609_length_353_cov_5.046429_g45214_i0 PRJNA669701 45609 353 5.046429 17.81389437 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 65.1 1.86e-9   NR XP_053554991.1 8345 g45214 i0 43.8 4.07082152974504 73 34 56.1 1 33 230 41 113 XP_053554991.1 heat shock factor protein 3 isoform X1 [Bombina bombina] diamond 1437 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
29733879 29733879 PRJNA669701_P_NODE_103950_length_254_cov_3.370166_g103555_i0 PRJNA669701 103950 254 3.370166 8.56022164 Ranitomeya imitator 111125 Chordata Chordata 55.5 1.07e-6   NR CAJ0963981.1 111125 g103555 i0 45.9 0.720472440944882 61 32 70.9 1 34 213 92 152 CAJ0963981.1 unnamed protein product [Ranitomeya imitator] diamond 183 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
29840946 29840946 PRJNA669701_P_NODE_67151_length_301_cov_1.903509_g66756_i0 PRJNA669701 67151 301 1.903509 5.72956209 Metazoa 33208 Chordata Chordata 86.7 1.69e-17   NR KYO33125.1 8496 g66756 i0 62.9 13.0764119601329 70 26 69.8 0 260 51 25 94 KYO33125.1 patatin-like phospholipase domain-containing protein 1 [Alligator mississippiensis] diamond 3936 87.4 0.991990846681922 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
29904197 29904197 PRJNA669701_P_NODE_117251_length_248_cov_0.994286_g116856_i0 PRJNA669701 117251 248 0.994286 2.46582928 Metazoa 33208 Chordata Chordata 62.4 1.8e-10   NR XP_036624093.1 9337 g116856 i0 56.6 57.3266129032258 53 23 64.1 0 1 159 23 75 XP_036624093.1 NEDD8-like [Trichosurus vulpecula] diamond 14217 62.8 0.993630573248408 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phalangeridae Trichosurus Trichosurus vulpecula
30176291 30176291 PRJNA669701_P_NODE_128672_length_245_cov_0.895349_g128277_i0 PRJNA669701 128672 245 0.895349 2.19360505 Grus japonensis 30415 Chordata Chordata 53.9 3.06e-6   NR GAB0178056.1 30415 g128277 i0 44 1.84897959183673 75 37 86.9 2 239 27 161 234 GAB0178056.1 mitochondrial enolase superfamily member 1 [Grus japonensis] diamond 453 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
30461208 30461208 PRJNA669701_P_NODE_133013_length_244_cov_0.871345_g132618_i0 PRJNA669701 133013 244 0.871345 2.1260818 Callorhinchus milii 7868 Chordata Chordata 87 2.35e-20   NR XP_007889645.1 7868 g132618 i0 57.3 2.82786885245902 75 31 92.2 1 225 1 2 75 XP_007889645.1 cytochrome b-c1 complex subunit 8 [Callorhinchus milii] diamond 690 87 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
30555361 30555361 PRJNA669701_P_NODE_137453_length_242_cov_0.911243_g137058_i0 PRJNA669701 137453 242 0.911243 2.20520806 Branchiostoma lanceolatum 7740 Chordata Chordata 113 5.9899999999999995e-30   NR AAN73350.1 7740 g137058 i0 66.7 2.90082644628099 78 26 96.7 0 4 237 1 78 AAN73350.1 ribosomal protein L17, partial [Branchiostoma lanceolatum] diamond 702 113 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
30650119 30650119 PRJNA669701_P_NODE_112813_length_250_cov_0.870056_g112418_i0 PRJNA669701 112813 250 0.870056 2.17514 Apodemus speciosus 105296 Chordata Chordata 67.4 8.01e-11   NR GAB1298095.1 105296 g112418 i0 65.4 0.624 52 17 62.4 1 8 163 162 212 GAB1298095.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Apodemus speciosus] diamond 156 67.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
31883220 31883220 PRJNA669701_P_NODE_5197_length_1089_cov_5.786417_g4906_i0 PRJNA669701 5197 1089 5.786417 63.01408113 Leucoraja erinaceus 7782 Chordata Chordata 47.8 0.0443   NR XP_055487001.1 7782 g4906 i0 48.5 0.181818181818182 66 30 17.6 3 774 965 152 215 XP_055487001.1 E3 ubiquitin-protein ligase TRIM47-like isoform X1 [Leucoraja erinaceus] diamond 198 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
31978154 31978154 PRJNA669701_P_NODE_135398_length_243_cov_0.905882_g135003_i0 PRJNA669701 135398 243 0.905882 2.20129326 Rattus norvegicus 10116 Chordata Chordata 55.8 1.58e-8   NR EDL86057.1 10116 g135003 i0 100 0.333333333333333 27 0 33.3 0 82 2 1 27 EDL86057.1 rCG37342 [Rattus norvegicus] diamond 81 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
32338535 32338535 PRJNA669701_P_NODE_79719_length_282_cov_1.574163_g79324_i0 PRJNA669701 79719 282 1.574163 4.43913966 Opisthokonta 33154 Chordata Chordata 108 5.92e-25   NR EGW03408.1 10029 g79324 i0 51.6 11.6489361702128 93 44 98.9 1 279 1 60 151 EGW03408.1 Sperm motility kinase X [Cricetulus griseus] diamond 3285 108 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
32433446 32433446 PRJNA669701_P_NODE_102319_length_256_cov_2.136612_g101924_i0 PRJNA669701 102319 256 2.136612 5.46972672 root 1 Root_unresolved Root_unresolved 60.1 1.36e-8   NR NXP89208.1 142471 g101924 i0 46.9 15.3515625 64 33 73.8 1 252 64 25 88 NXP89208.1 DNJB8 protein [Passerina amoena] diamond 3930 60.5 0.993388429752066 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Cardinalidae Passerina Passerina amoena
32484611 32484611 PRJNA669701_P_NODE_136239_length_243_cov_0.905882_g135844_i0 PRJNA669701 136239 243 0.905882 2.20129326 Manis pentadactyla 143292 Chordata Chordata 47.4 2.93e-4   NR KAI5279970.1 143292 g135844 i0 52.6 0.469135802469136 38 18 46.9 0 114 227 76 113 KAI5279970.1 Sh2 Domain-Containing Adapter Protein F [Manis pentadactyla] diamond 114 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis pentadactyla
32622709 32622709 PRJNA669701_P_NODE_148840_length_212_cov_7.359712_g148445_i0 PRJNA669701 148840 212 7.359712 15.60258944 Metazoa 33208 Chordata Chordata 63.5 1.15e-9   NR XP_059827898.1 79690 g148445 i0 48.4 4.5 64 33 90.6 0 9 200 877 940 XP_059827898.1 presequence protease, mitochondrial [Hypanus sabinus] diamond 954 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
32906090 32906090 PRJNA669701_P_NODE_126640_length_245_cov_1.790698_g126245_i0 PRJNA669701 126640 245 1.790698 4.3872101 root 1 Root_unresolved Root_unresolved 168 1.12e-46   NR AAA39757.1 10090 g126245 i0 100 23.8040816326531 81 0 99.2 0 243 1 4 84 AAA39757.1 pol protein, partial [Mus musculus] diamond 5832 168 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;