RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "diamond", bioproject = "PRJNA669701" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA669701 · 10 ✖

analysis 1

  • diamond · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28388453 28388453 PRJNA669701_P_NODE_30466_length_425_cov_3.022727_g30071_i0 PRJNA669701 30466 425 3.022727 12.84658975 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 102 3.0800000000000003e-22   NR POM82495.1 93969 g30071 i0 54.9 9.81882352941176 82 37 57.9 0 260 15 5989 6070 POM82495.1 HECT-domain (ubiquitin-transferase) family protein [Cryptosporidium meleagridis] diamond 4173 103 0.990291262135922 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium meleagridis
28451805 28451805 PRJNA669701_P_NODE_116686_length_248_cov_1.760000_g116291_i0 PRJNA669701 116686 248 1.76 4.3648 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 99.4 6.24e-25   NR XP_067802537.1 323732 g116291 i0 61.7 3.82258064516129 81 31 98 0 2 244 10 90 XP_067802537.1 Ribosomal protein S25 [Babesia duncani] diamond 948 99.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia duncani
28451816 28451816 PRJNA669701_P_NODE_90066_length_270_cov_1.345178_g89671_i0 PRJNA669701 90066 270 1.345178 3.6319806 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 48.5 4.92e-4   NR KNC35130.1 580058 g89671 i0 92.3 0.577777777777778 26 2 28.9 0 187 264 523 548 KNC35130.1 erythrocyte membrane protein 1 [Plasmodium falciparum RAJ116] diamond 156 48.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
29260388 29260388 PRJNA669701_P_NODE_93989_length_265_cov_3.505208_g93594_i0 PRJNA669701 93989 265 3.505208 9.2888012 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 103 3.25e-25   NR OEH76901.1 88456 g93594 i0 64.4 5.89811320754717 87 31 98.5 0 265 5 107 193 OEH76901.1 ribosomal protein rpl19 [Cyclospora cayetanensis] diamond 1563 103 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
30334862 30334862 PRJNA669701_P_NODE_84372_length_277_cov_1.122549_g83977_i0 PRJNA669701 84372 277 1.122549 3.10946073 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 47.8 9.67e-4   NR XP_011131355.1 110365 g83977 i0 72.4 0.314079422382672 29 8 31.4 0 31 117 340 368 XP_011131355.1 putative transmembrane protein [Gregarina niphandrodes] diamond 87 47.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
30492418 30492418 PRJNA669701_P_NODE_120073_length_247_cov_1.649425_g119678_i0 PRJNA669701 120073 247 1.649425 4.07407975 Plasmodium falciparum 7G8 57266 SAR_Eukaryotes SAR_Eukaryotes 47.8 6.98e-4   NR EUR64179.1 57266 g119678 i0 92.9 0.340080971659919 28 2 34 0 225 142 239 266 EUR64179.1 hypothetical protein PFBG_05179, partial [Plasmodium falciparum 7G8] diamond 84 47.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
31250656 31250656 PRJNA669701_P_NODE_139815_length_241_cov_5.476190_g139420_i0 PRJNA669701 139815 241 5.47619 13.1976179 Plasmodium falciparum Santa Lucia 478859 SAR_Eukaryotes SAR_Eukaryotes 47.4 8.44e-4   NR EUT90749.1 478859 g139420 i0 87.8 0.510373443983402 41 5 51 0 125 3 148 188 EUT90749.1 hypothetical protein PFAG_01106 [Plasmodium falciparum Santa Lucia] diamond 123 47.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
31313932 31313932 PRJNA669701_P_NODE_137155_length_242_cov_1.408284_g136760_i0 PRJNA669701 137155 242 1.408284 3.40804728 Cryptosporidium sp. chipmunk genotype I 1280935 SAR_Eukaryotes SAR_Eukaryotes 47.4 8.66e-4   NR XP_067200564.1 1280935 g136760 i0 79.2 0.892561983471074 24 5 29.8 0 85 156 691 714 XP_067200564.1 membrane associated adenylyl cyclase with 6 transmembrane regions and an adenylyl cyclase domain [Cryptosporidium sp. chipmunk genotype I] diamond 216 47.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium sp. chipmunk genotype I
31673797 31673797 PRJNA669701_P_NODE_90757_length_269_cov_1.571429_g90362_i0 PRJNA669701 90757 269 1.571429 4.22714401 Babesia 5864 SAR_Eukaryotes SAR_Eukaryotes 82 2.44e-17   NR KAK1938396.1 32595 g90362 i0 44.9 5.95539033457249 89 49 99.3 0 2 268 37 125 KAK1938396.1 putative mago nashi protein [Babesia divergens] diamond 1602 82.4 0.995145631067961 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia divergens
31737015 31737015 PRJNA669701_P_NODE_70637_length_294_cov_2.212670_g70242_i0 PRJNA669701 70637 294 2.21267 6.5052498 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 87.8 1.01e-17   NR ETW63707.1 5835 g70242 i0 100 1.95918367346939 48 0 49 0 292 149 645 692 ETW63707.1 hypothetical protein PFMC_00453 [Plasmodium falciparum CAMP/Malaysia] diamond 576 87.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;