RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA667863" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA667863 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27808371 27808371 PRJNA667863_P_NODE_17204_length_241_cov_0.910714_g17170_i0 PRJNA667863 17204 241 0.910714 2.19482074 Truepera radiovictrix 332249 Bacteria Bacteria 77.8 3.03e-15   NR WP_148221201.1 332249 g17170 i0 57.9 0.946058091286307 76 31 94.6 1 241 14 41 115 WP_148221201.1 hypothetical protein [Truepera radiovictrix] diamond 228 77.8 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
28755356 28755356 PRJNA667863_P_NODE_14067_length_246_cov_0.890173_g14033_i0 PRJNA667863 14067 246 0.890173 2.18982558 uncultured Truepera sp. 543023 Bacteria Bacteria 114 1.6499999999999999e-28   NR CAA9571640.1 543023 g14033 i0 65.4 0.98780487804878 81 28 98.8 0 245 3 59 139 CAA9571640.1 MAG: Inner membrane protein translocase component YidC, long form, partial [uncultured Truepera sp.] diamond 243 114 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera uncultured Truepera sp.
29260325 29260325 PRJNA667863_P_NODE_13809_length_246_cov_2.248555_g13775_i0 PRJNA667863 13809 246 2.248555 5.5314453 Deinococcus radiodurans 1299 Bacteria Bacteria 53.9 2.65e-6   NR WP_051618842.1 1299 g13775 i0 38.5 1.91463414634146 78 45 91.5 2 242 18 132 209 WP_051618842.1 TetR/AcrR family transcriptional regulator [Deinococcus radiodurans] diamond 471 53.9 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
32516327 32516327 PRJNA667863_P_NODE_12279_length_249_cov_1.312500_g12245_i0 PRJNA667863 12279 249 1.3125 3.268125 Deinococcus sedimenti 1867090 Bacteria Bacteria 133 7.729999999999998e-35   NR WP_189074699.1 1867090 g12245 i0 75.9 1.97590361445783 83 20 100 0 1 249 280 362 WP_189074699.1 FAD-binding domain-containing protein [Deinococcus sedimenti] diamond 492 133 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sedimenti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;