RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA666695" and tax_phylum = "Deferribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Deferribacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA666695 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27492362 27492362 PRJNA666695_S_NODE_135943_length_188_cov_1.251701_g134849_i0 PRJNA666695 135943 188 1.251701 2.35319788 Deferribacteraceae bacterium 2053543 Bacteria Bacteria 47.8 3.06e-4   NR MBZ4642641.1 2053543 g134849 i0 45.5 1.54787234042553 44 24 70.2 0 170 39 525 568 MBZ4642641.1 hypothetical protein [Deferribacteraceae bacterium] diamond 291 47.8 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Deferribacteraceae   Deferribacteraceae bacterium
29745908 29745908 PRJNA666695_S_NODE_97130_length_223_cov_1.263736_g96036_i0 PRJNA666695 97130 223 1.263736 2.81813128 Bacteria 2 Bacteria Bacteria 52.8 3.56e-6   NR WP_407649378.1 46201 g96036 i0 47.3 3.80717488789238 55 29 74 0 213 49 90 144 WP_407649378.1 translation initiation factor IF-3 [Geovibrio ferrireducens] diamond 849 52.8 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Geovibrio Geovibrio ferrireducens
32547966 32547966 PRJNA666695_S_NODE_62939_length_268_cov_2.431718_g61845_i0 PRJNA666695 62939 268 2.431718 6.51700424 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 98.6 3.700000000000001e-22   NR WP_013451030.1 477976 g61845 i0 64.6 4.45522388059702 79 28 88.4 0 263 27 270 348 WP_013451030.1 peptide chain release factor 2 [Calditerrivibrio nitroreducens] diamond 1194 98.6 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;