RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA666695" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 17 ✖

tax_clade 1

bioproject 1

  • PRJNA666695 · 17 ✖

analysis 1

  • diamond · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5733927 5733927 PRJNA666695_S_NODE_125145_length_196_cov_2.374194_g124051_i0 PRJNA666695 125145 196 2.374194 4.65342024 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 87.8 9.51e-20   NR MBX9809928.1 2044595 g124051 i0 87.5 0.73469387755102 48 6 73.5 0 196 53 142 189 MBX9809928.1 sigma-70 family RNA polymerase sigma factor [Candidatus Altimarinota bacterium] diamond 144 87.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
17208452 17208452 PRJNA666695_S_NODE_123654_length_197_cov_3.750000_g122560_i0 PRJNA666695 123654 197 3.75 7.3875 Bacteria 2 Bacteria Bacteria 106 1.46e-25   NR PIQ41343.1 1974579 g122560 i0 84.6 7.91878172588832 65 10 99 0 3 197 184 248 PIQ41343.1 MAG: DEAD/DEAH box helicase, partial [Candidatus Gracilibacteria bacterium CG12_big_fil_rev_8_21_14_0_65_38_15] diamond 1560 107 0.990654205607477 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium CG12_big_fil_rev_8_21_14_0_65_38_15
19757094 19757094 PRJNA666695_S_NODE_111716_length_208_cov_2.203593_g110622_i0 PRJNA666695 111716 208 2.203593 4.58347344 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 120 7.589999999999999e-30   NR MBX9808813.1 2044595 g110622 i0 85.5 0.995192307692308 69 10 99.5 0 2 208 770 838 MBX9808813.1 ATP-dependent Clp protease ATP-binding subunit [Candidatus Altimarinota bacterium] diamond 207 120 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
20289477 20289477 PRJNA666695_S_NODE_49856_length_294_cov_2.071146_g48762_i0 PRJNA666695 49856 294 2.071146 6.08916924 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 176 2.09e-50   NR MBX9809704.1 2044595 g48762 i0 92.8 5.89795918367347 97 7 99 0 292 2 82 178 MBX9809704.1 translational GTPase TypA [Candidatus Altimarinota bacterium] diamond 1734 176 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
23583139 23583139 PRJNA666695_S_NODE_125719_length_196_cov_1.412903_g124625_i0 PRJNA666695 125719 196 1.412903 2.76928988 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 106 8.71e-25   NR MDD2694056.1 2044595 g124625 i0 87.7 1.74489795918367 57 7 87.2 0 196 26 752 808 MDD2694056.1 type I DNA topoisomerase [Candidatus Altimarinota bacterium] diamond 342 106 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
26840734 26840734 PRJNA666695_S_NODE_190661_length_153_cov_1.232143_g189567_i0 PRJNA666695 190661 153 1.232143 1.88517879 Bacteria 2 Bacteria Bacteria 84.3 2.18e-17   NR MFA5843086.1 2044595 g189567 i0 76 38.0196078431373 50 12 98 0 151 2 400 449 MFA5843086.1 ATP-binding cassette domain-containing protein [Candidatus Altimarinota bacterium] diamond 5817 84.3 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27081477 27081477 PRJNA666695_S_NODE_14522_length_469_cov_7.196262_g13435_i0 PRJNA666695 14522 469 7.196262 33.75046878 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 59.7 4.4e-7   NR MDD3646848.1 2044595 g13435 i0 31.2 3.12153518123667 109 67 66.5 2 407 96 3 108 MDD3646848.1 Ig-like domain-containing protein [Candidatus Altimarinota bacterium] diamond 1464 59.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27902647 27902647 PRJNA666695_S_NODE_88605_length_232_cov_2.408377_g87511_i0 PRJNA666695 88605 232 2.408377 5.58743464 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 134 2.35e-34   NR MBX9809032.1 2044595 g87511 i0 84.2 0.982758620689655 76 12 98.3 0 232 5 513 588 MBX9809032.1 beta-propeller domain-containing protein [Candidatus Altimarinota bacterium] diamond 228 134 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
28029222 28029222 PRJNA666695_S_NODE_43445_length_310_cov_2.565056_g42351_i0 PRJNA666695 43445 310 2.565056 7.9516736 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 106 3.79e-24   NR MBX9809025.1 2044595 g42351 i0 66.3 0.803225806451613 83 28 80.3 0 61 309 309 391 MBX9809025.1 biotin/lipoyl-binding protein [Candidatus Altimarinota bacterium] diamond 249 106 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
28123806 28123806 PRJNA666695_S_NODE_151645_length_176_cov_2.385185_g150551_i0 PRJNA666695 151645 176 2.385185 4.1979256 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 118 2.6199999999999997e-30   NR MBX9808805.1 2044595 g150551 i0 96.6 0.988636363636364 58 2 98.9 0 3 176 228 285 MBX9808805.1 histidine--tRNA ligase [Candidatus Altimarinota bacterium] diamond 174 118 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
28218244 28218244 PRJNA666695_S_NODE_13926_length_477_cov_7.206422_g12839_i0 PRJNA666695 13926 477 7.206422 34.37463294 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 59.3 6.48e-7   NR MDD3646848.1 2044595 g12839 i0 31.2 2.31446540880503 109 67 65.4 2 63 374 3 108 MDD3646848.1 Ig-like domain-containing protein [Candidatus Altimarinota bacterium] diamond 1104 59.3 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29512954 29512954 PRJNA666695_S_NODE_95550_length_224_cov_3.267760_g94456_i0 PRJNA666695 95550 224 3.26776 7.3197824 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 129 6.919999999999999e-34   NR MBC7503922.1 2044595 g94456 i0 89.2 0.991071428571429 74 8 99.1 0 3 224 6 79 MBC7503922.1 S1 RNA-binding domain-containing protein [Candidatus Altimarinota bacterium] diamond 222 129 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29575937 29575937 PRJNA666695_S_NODE_144950_length_181_cov_1.971429_g143856_i0 PRJNA666695 144950 181 1.971429 3.56828649 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 60.8 6.67e-9   NR MBX9809025.1 2044595 g143856 i0 70 0.662983425414365 40 12 66.3 0 181 62 432 471 MBX9809025.1 biotin/lipoyl-binding protein [Candidatus Altimarinota bacterium] diamond 120 60.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29670540 29670540 PRJNA666695_S_NODE_147930_length_179_cov_1.666667_g146836_i0 PRJNA666695 147930 179 1.666667 2.98333393 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 72 1.7e-13   NR MBX9809335.1 2044595 g146836 i0 82.9 0.687150837988827 41 7 68.7 0 57 179 101 141 MBX9809335.1 PKD domain-containing protein [Candidatus Altimarinota bacterium] diamond 123 72 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29860411 29860411 PRJNA666695_S_NODE_90551_length_230_cov_1.947090_g89457_i0 PRJNA666695 90551 230 1.94709 4.478307 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 60.1 2.39e-8   NR MBX9809298.1 2044595 g89457 i0 83.9 0.404347826086957 31 5 40.4 0 90 182 446 476 MBX9809298.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 93 60.1 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31535515 31535515 PRJNA666695_S_NODE_69396_length_257_cov_6.375000_g68302_i0 PRJNA666695 69396 257 6.375 16.38375 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 62.4 2.4e-9   NR MDD3302265.1 2044595 g68302 i0 42.9 0.735408560311284 63 35 73.5 1 255 67 149 210 MDD3302265.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 189 62.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31693348 31693348 PRJNA666695_S_NODE_123097_length_198_cov_1.757962_g122003_i0 PRJNA666695 123097 198 1.757962 3.48076476 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 65.1 2.64e-10   NR MBC7498862.1 2044595 g122003 i0 72.1 1.95454545454545 43 12 65.2 0 68 196 238 280 MBC7498862.1 ABC-F family ATP-binding cassette domain-containing protein [Candidatus Altimarinota bacterium] diamond 387 65.1 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;