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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA666695" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 7 ✖

bioproject 1

  • PRJNA666695 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4461140 4461140 PRJNA666695_S_NODE_77664_length_246_cov_2.024390_g76570_i0 PRJNA666695 77664 246 2.02439 4.9799994 Pseudomonadota 1224 Bacteria Bacteria 120 1.71e-29   NR MBF0352335.1 2024889 g76570 i0 67.5 4.8780487804878 80 26 97.6 0 246 7 628 707 MBF0352335.1 methylmalonyl-CoA mutase [SAR324 cluster bacterium] diamond 1200 120 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
28249898 28249898 PRJNA666695_S_NODE_104726_length_215_cov_1.586207_g103632_i0 PRJNA666695 104726 215 1.586207 3.41034505 Microvenator marinus 2600177 Bacteria Bacteria 46.2 0.00158   NR WP_146959293.1 2600177 g103632 i0 41.9 0.865116279069767 62 35 86.5 1 29 214 1383 1443 WP_146959293.1 hypothetical protein [Microvenator marinus] diamond 186 46.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
28893515 28893515 PRJNA666695_S_NODE_37448_length_328_cov_3.020906_g36354_i0 PRJNA666695 37448 328 3.020906 9.90857168 Pseudomonadati 3379134 Bacteria Bacteria 144 3.9399999999999997e-38   NR OGP58345.1 1797827 g36354 i0 65.7 14.8170731707317 108 33 98.8 1 324 1 431 534 OGP58345.1 MAG: AMP-dependent synthetase [Deltaproteobacteria bacterium RBG_13_49_15] diamond 4860 144 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_49_15
29923637 29923637 PRJNA666695_S_NODE_111171_length_209_cov_0.970238_g110077_i0 PRJNA666695 111171 209 0.970238 2.02779742 SAR324 cluster bacterium 2024889 Bacteria Bacteria 41.6 0.0225   NR MEC8594321.1 2024889 g110077 i0 56 0.358851674641148 25 11 35.9 0 45 119 38 62 MEC8594321.1 hypothetical protein [SAR324 cluster bacterium] diamond 75 41.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30144372 30144372 PRJNA666695_S_NODE_28792_length_362_cov_2.760125_g27699_i0 PRJNA666695 28792 362 2.760125 9.9916525 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 2013747 Bacteria Bacteria 75.9 3.06e-14   NR PKN46214.1 2013748 g27699 i0 56.1 0.546961325966851 66 27 54.7 1 40 237 122 185 PKN46214.1 MAG: macrodomain protein [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20] diamond 198 75.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20
30303189 30303189 PRJNA666695_S_NODE_58312_length_276_cov_3.489362_g57218_i0 PRJNA666695 58312 276 3.489362 9.63063912 Persicimonas caeni 2292766 Bacteria Bacteria 63.5 2.68e-9   NR WP_141197549.1 2292766 g57218 i0 40.4 1.95652173913043 89 44 96.7 1 275 9 872 951 WP_141197549.1 IPT/TIG domain-containing protein [Persicimonas caeni] diamond 540 63.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
32780053 32780053 PRJNA666695_S_NODE_160200_length_171_cov_1.061538_g159106_i0 PRJNA666695 160200 171 1.061538 1.81522998 Bdellovibrionota 3018035 Bacteria Bacteria 65.5 1.38e-10   NR WP_111331151.1 1548548 g159106 i0 54.5 13.7368421052632 44 20 77.2 0 1 132 641 684 WP_111331151.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein [Bradymonas sediminis] diamond 2349 65.9 0.993930197268589 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;