RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA665531" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA665531 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29418135 29418135 PRJNA665531_P_NODE_17529_length_249_cov_0.875000_g17293_i0 PRJNA665531 17529 249 0.875 2.17875 Pseudodesulfovibrio sp. zrk46 2725288 Bacteria Bacteria 73.2 4.85e-13   NR WP_168889724.1 2725288 g17293 i0 61.7 1.44578313253012 60 23 72.3 0 67 246 1 60 WP_168889724.1 ATP-grasp domain-containing protein [Pseudodesulfovibrio sp. zrk46] diamond 360 73.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio sp. zrk46
29840901 29840901 PRJNA665531_P_NODE_17911_length_247_cov_1.350575_g17675_i0 PRJNA665531 17911 247 1.350575 3.33592025 Bacteria 2 Bacteria Bacteria 52.8 2.01e-6   NR CAJ55200.1 363253 g17675 i0 58.5 1.63967611336032 41 12 47.4 2 205 89 50 87 CAJ55200.1 Unknown [Lawsonia intracellularis PHE/MN1-00] diamond 405 53.1 0.994350282485876 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;