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contig_metadata

25 rows where analysis = "diamond", bioproject = "PRJNA665531" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 25 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA665531 · 25 ✖

analysis 1

  • diamond · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1162259 1162259 PRJNA665531_P_NODE_17761_length_248_cov_0.880000_g17525_i0 PRJNA665531 17761 248 0.88 2.1824 Pedobacter indicus 2292082 Bacteria Bacteria 162 1.76e-44   NR WP_118194358.1 2292082 g17525 i0 95.1 2.9758064516129 82 4 99.2 0 248 3 272 353 WP_118194358.1 TonB-dependent receptor [Pedobacter indicus] diamond 738 162 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Albibacterium Albibacterium indicum
5732980 5732980 PRJNA665531_P_NODE_5525_length_464_cov_1.682864_g5289_i0 PRJNA665531 5525 464 1.682864 7.80848896 Flavobacterium tegetincola 150172 Bacteria Bacteria 202 1.1900000000000001e-63   NR WP_026978546.1 150172 g5289 i0 95 0.65301724137931 101 5 65.3 0 304 2 1 101 WP_026978546.1 3-hydroxyanthranilate 3,4-dioxygenase [Flavobacterium tegetincola] diamond 303 202 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium tegetincola
7007822 7007822 PRJNA665531_P_NODE_10986_length_314_cov_1.278008_g10750_i0 PRJNA665531 10986 314 1.278008 4.01294512 Pedobacter sp. CG_S7 3143930 Bacteria Bacteria 162 8.62e-48   NR WP_354329929.1 3143930 g10750 i0 80 3.02866242038217 105 20 99.4 1 3 314 109 213 WP_354329929.1 LytR/AlgR family response regulator transcription factor [Pedobacter sp. CG_S7] diamond 951 162 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. CG_S7
19756524 19756524 PRJNA665531_P_NODE_9116_length_347_cov_1.770073_g8880_i0 PRJNA665531 9116 347 1.770073 6.14215331 Flavobacteriaceae bacterium Ap0902 2684397 Bacteria Bacteria 213 6.439999999999998e-69   NR MXV39296.1 2684397 g8880 i0 93 0.985590778097983 114 8 98.6 0 4 345 1 114 MXV39296.1 30S ribosomal protein S8 [Flavobacteriaceae bacterium Ap0902] diamond 342 213 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae   Flavobacteriaceae bacterium Ap0902
22306591 22306591 PRJNA665531_P_NODE_15318_length_264_cov_2.418848_g15082_i0 PRJNA665531 15318 264 2.418848 6.38575872 Emticicia sp. C21 2302915 Bacteria Bacteria 159 3.98e-46   NR WP_116985618.1 2302915 g15082 i0 84 0.920454545454545 81 13 92 0 22 264 194 274 WP_116985618.1 formylglycine-generating enzyme family protein [Emticicia sp. C21] diamond 243 159 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Emticicia Emticicia sp. C21
26669679 26669679 PRJNA665531_P_NODE_19121_length_242_cov_0.911243_g18885_i0 PRJNA665531 19121 242 0.911243 2.20520806 Alloprevotella sp. oral taxon 473 712469 Bacteria Bacteria 162 1.08e-45   NR WP_009436197.1 712469 g18885 i0 100 0.991735537190083 80 0 99.2 0 241 2 321 400 WP_009436197.1 hypothetical protein [Alloprevotella sp. oral taxon 473] diamond 240 162 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Alloprevotella Alloprevotella sp. oral taxon 473
27334504 27334504 PRJNA665531_P_NODE_19143_length_242_cov_0.911243_g18907_i0 PRJNA665531 19143 242 0.911243 2.20520806 Flavobacterium sp. GT3R68 2594437 Bacteria Bacteria 129 2.51e-33   NR WP_126745139.1 2594437 g18907 i0 82.3 1.94628099173554 79 14 97.9 0 238 2 226 304 WP_126745139.1 trigger factor [Flavobacterium sp. GT3R68] diamond 471 129 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. GT3R68
27745114 27745114 PRJNA665531_P_NODE_17484_length_249_cov_0.875000_g17248_i0 PRJNA665531 17484 249 0.875 2.17875 Pedobacter sp. CAN_A7 2787722 Bacteria Bacteria 169 1.77e-46   NR WP_196859816.1 2787722 g17248 i0 96.3 0.987951807228916 82 3 98.8 0 248 3 852 933 WP_196859816.1 SusC/RagA family TonB-linked outer membrane protein [Pedobacter sp. CAN_A7] diamond 246 169 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. CAN_A7
27839407 27839407 PRJNA665531_P_NODE_17564_length_249_cov_0.875000_g17328_i0 PRJNA665531 17564 249 0.875 2.17875 Chitinophagaceae bacterium 1869212 Bacteria Bacteria 146 1.21e-38   NR MBL0133609.1 1869212 g17328 i0 86.6 0.987951807228916 82 11 98.8 0 248 3 1380 1461 MBL0133609.1 gliding motility-associated C-terminal domain-containing protein [Chitinophagaceae bacterium] diamond 246 146 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
27902530 27902530 PRJNA665531_P_NODE_14645_length_271_cov_0.924242_g14409_i0 PRJNA665531 14645 271 0.924242 2.50469582 Alloprevotella sp. 1872471 Bacteria Bacteria 184 4.39e-53   NR RKV74551.1 1872471 g14409 i0 100 2.98892988929889 90 0 99.6 0 271 2 141 230 RKV74551.1 MAG: TonB-dependent receptor, partial [Alloprevotella sp.] diamond 810 184 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Alloprevotella Alloprevotella sp.
27934357 27934357 PRJNA665531_P_NODE_7445_length_390_cov_1.586751_g7209_i0 PRJNA665531 7445 390 1.586751 6.1883289 uncultured Capnocytophaga sp. 159273 Bacteria Bacteria 265 2.67e-82   NR WP_314894113.1 159273 g7209 i0 100 1 130 0 100 0 390 1 420 549 WP_314894113.1 heavy metal translocating P-type ATPase [uncultured Capnocytophaga sp.] diamond 390 265 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga uncultured Capnocytophaga sp.
28735817 28735817 PRJNA665531_P_NODE_19127_length_242_cov_0.911243_g18891_i0 PRJNA665531 19127 242 0.911243 2.20520806 Flavobacterium 237 Bacteria Bacteria 126 1.8599999999999998e-32   NR WP_396177295.1 239 g18891 i0 77.5 1.97107438016529 80 18 99.2 0 242 3 21 100 WP_396177295.1 O-antigen ligase family protein [Flavobacterium sp.] diamond 477 126 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp.
29114744 29114744 PRJNA665531_P_NODE_17248_length_250_cov_0.870056_g17012_i0 PRJNA665531 17248 250 0.870056 2.17514 Capnocytophaga 1016 Bacteria Bacteria 152 4.24e-43   NR WP_002667886.1 1017 g17012 i0 86.7 2.988 83 11 99.6 0 2 250 27 109 WP_002667886.1 tryptophan--tRNA ligase [Capnocytophaga gingivalis] diamond 747 152 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga Capnocytophaga gingivalis
29481105 29481105 PRJNA665531_P_NODE_19350_length_241_cov_0.916667_g19114_i0 PRJNA665531 19350 241 0.916667 2.20916747 Paenimyroides baculatum 2608000 Bacteria Bacteria 158 2.03e-46   NR WP_150011662.1 2608000 g19114 i0 100 2.98755186721992 80 0 99.6 0 1 240 58 137 WP_150011662.1 NYN domain-containing protein [Paenimyroides baculatum] diamond 720 158 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Paenimyroides Paenimyroides baculatum
29733757 29733757 PRJNA665531_P_NODE_13910_length_278_cov_1.107317_g13674_i0 PRJNA665531 13910 278 1.107317 3.07834126 Flavihumibacter sp. UBA7668 1946542 Bacteria Bacteria 152 1.8799999999999994e-42   NR WP_290789542.1 1946542 g13674 i0 80.4 1.98561151079137 92 18 99.3 0 278 3 136 227 WP_290789542.1 galactokinase [Flavihumibacter sp. UBA7668] diamond 552 152 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Flavihumibacter Flavihumibacter sp. UBA7668
29765434 29765434 PRJNA665531_P_NODE_17491_length_249_cov_0.875000_g17255_i0 PRJNA665531 17491 249 0.875 2.17875 Pedobacter agri 454586 Bacteria Bacteria 79.3 3.84e-15   NR WP_316795137.1 454586 g17255 i0 53.4 0.879518072289157 73 32 85.5 1 2 214 310 382 WP_316795137.1 metallophosphoesterase [Pedobacter agri] diamond 219 79.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter agri
30271313 30271313 PRJNA665531_P_NODE_12572_length_292_cov_2.831050_g12336_i0 PRJNA665531 12572 292 2.83105 8.266666 Cytophagaceae bacterium 2026729 Bacteria Bacteria 51.2 3.66e-5   NR HWZ21745.1 2026729 g12336 i0 35.2 0.729452054794521 71 43 69.9 1 263 60 118 188 HWZ21745.1 hypothetical protein [Cytophagaceae bacterium] diamond 213 51.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae   Cytophagaceae bacterium
30271317 30271317 PRJNA665531_P_NODE_17512_length_249_cov_0.875000_g17276_i0 PRJNA665531 17512 249 0.875 2.17875 Flavobacterium tegetincola 150172 Bacteria Bacteria 104 2.4299999999999994e-24   NR WP_026976546.1 150172 g17276 i0 65.9 1.90361445783133 82 28 98.8 0 3 248 119 200 WP_026976546.1 GNAT family N-acetyltransferase [Flavobacterium tegetincola] diamond 474 104 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium tegetincola
30315263 30315263 PRJNA665531_P_NODE_17952_length_247_cov_0.885057_g17716_i0 PRJNA665531 17952 247 0.885057 2.18609079 Chryseobacterium 59732 Bacteria Bacteria 147 1.6799999999999994e-42   NR RZJ37258.1 1871047 g17716 i0 92.1 2.74493927125506 76 6 92.3 0 229 2 142 217 RZJ37258.1 MAG: sorbosone dehydrogenase family protein, partial [Chryseobacterium sp.] diamond 678 147 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp.
30555214 30555214 PRJNA665531_P_NODE_12873_length_289_cov_1.032407_g12637_i0 PRJNA665531 12873 289 1.032407 2.98365623 uncultured Capnocytophaga sp. 159273 Bacteria Bacteria 184 3.3399999999999996e-57   NR WP_297979283.1 159273 g12637 i0 98.9 0.944636678200692 91 1 94.5 0 15 287 84 174 WP_297979283.1 hypothetical protein [uncultured Capnocytophaga sp.] diamond 273 184 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga uncultured Capnocytophaga sp.
31135916 31135916 PRJNA665531_P_NODE_14315_length_274_cov_1.527363_g14079_i0 PRJNA665531 14315 274 1.527363 4.18497462 Pedobacter 84567 Bacteria Bacteria 106 4.58e-26   NR WP_133556051.1 425511 g14079 i0 98.1 7.0948905109489 54 1 59.1 0 111 272 1 54 WP_133556051.1 LytR/AlgR family response regulator transcription factor [Pedobacter duraquae] diamond 1944 107 0.990654205607477 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter duraquae
31978010 31978010 PRJNA665531_P_NODE_15678_length_261_cov_1.851064_g15442_i0 PRJNA665531 15678 261 1.851064 4.83127704 uncultured Capnocytophaga sp. 159273 Bacteria Bacteria 64.3 4.8e-10   NR WP_298827276.1 159273 g15442 i0 66.7 0.551724137931034 48 15 54 1 142 2 124 171 WP_298827276.1 hypothetical protein [uncultured Capnocytophaga sp.] diamond 144 64.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Capnocytophaga uncultured Capnocytophaga sp.
32199631 32199631 PRJNA665531_P_NODE_17518_length_249_cov_0.875000_g17282_i0 PRJNA665531 17518 249 0.875 2.17875 Ferruginibacter sp. 1940288 Bacteria Bacteria 57 2.86e-7   NR MEO7307653.1 1940288 g17282 i0 45.7 0.843373493975904 70 34 84.3 2 211 2 2 67 MEO7307653.1 dienelactone hydrolase family protein [Ferruginibacter sp.] diamond 210 57 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Ferruginibacter Ferruginibacter sp.
32326502 32326502 PRJNA665531_P_NODE_14959_length_268_cov_1.394872_g14723_i0 PRJNA665531 14959 268 1.394872 3.73825696 Spirosoma lacussanchae 1884249 Bacteria Bacteria 120 1.12e-29   NR WP_138499255.1 1884249 g14723 i0 83.6 1.63432835820896 73 12 81.7 0 267 49 444 516 WP_138499255.1 phosphatase PAP2 family protein [Spirosoma lacussanchae] diamond 438 120 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae Spirosoma Spirosoma lacussanchae
32338495 32338495 PRJNA665531_P_NODE_10019_length_329_cov_2.406250_g9783_i0 PRJNA665531 10019 329 2.40625 7.9165625 Bacteroides 816 Bacteria Bacteria 105 2.0299999999999998e-24   NR WP_080979950.1 815 g9783 i0 43.5 6.93920972644377 108 61 98.5 0 6 329 8 115 WP_080979950.1 MULTISPECIES: DUF3575 domain-containing protein [Bacteroidaceae] diamond 2283 106 0.990566037735849 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae    

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;