RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA665531" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA665531 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7007960 7007960 PRJNA665531_P_NODE_17226_length_250_cov_0.870056_g16990_i0 PRJNA665531 17226 250 0.870056 2.17514 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 150 2.13e-43   NR MBX9601985.1 2212468 g16990 i0 96.4 0.996 83 3 99.6 0 250 2 116 198 MBX9601985.1 glucose 1-dehydrogenase [Bryobacteraceae bacterium] diamond 249 150 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29765435 29765435 PRJNA665531_P_NODE_6291_length_429_cov_3.991573_g6055_i0 PRJNA665531 6291 429 3.991573 17.12384817 Acidobacteriota bacterium 1978231 Bacteria Bacteria 59.7 1.48e-8   NR MBI2188566.1 1978231 g6055 i0 45.8 1.16783216783217 83 44 58 1 79 327 6 87 MBI2188566.1 antibiotic biosynthesis monooxygenase [Acidobacteriota bacterium] diamond 501 59.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29923619 29923619 PRJNA665531_P_NODE_18871_length_243_cov_0.905882_g18635_i0 PRJNA665531 18871 243 0.905882 2.20129326 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 89 1.55e-18   NR HTA70618.1 2212468 g18635 i0 73.2 4.14814814814815 56 15 69.1 0 75 242 1 56 HTA70618.1 hypothetical protein [Bryobacteraceae bacterium] diamond 1008 89 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
30713355 30713355 PRJNA665531_P_NODE_17314_length_250_cov_0.870056_g17078_i0 PRJNA665531 17314 250 0.870056 2.17514 Bryobacterales bacterium 2026791 Bacteria Bacteria 165 4.03e-45   NR MBL8240759.1 2026791 g17078 i0 95.1 0.984 82 4 98.4 0 3 248 521 602 MBL8240759.1 TonB-dependent receptor [Bryobacterales bacterium] diamond 246 165 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
31926897 31926897 PRJNA665531_P_NODE_19357_length_241_cov_0.916667_g19121_i0 PRJNA665531 19357 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 110 7.010000000000001e-26   NR MDE3069534.1 1978231 g19121 i0 80.6 4.48132780082988 72 14 89.6 0 3 218 786 857 MDE3069534.1 AAA family ATPase [Acidobacteriota bacterium] diamond 1080 111 0.990990990990991 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32358031 32358031 PRJNA665531_P_NODE_18199_length_246_cov_0.890173_g17963_i0 PRJNA665531 18199 246 0.890173 2.18982558 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 107 3.95e-25   NR HZT39126.1 2212468 g17963 i0 61.7 0.98780487804878 81 31 98.8 0 244 2 271 351 HZT39126.1 hypothetical protein [Bryobacteraceae bacterium] diamond 243 107 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;