RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA665531" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA665531 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30429423 30429423 PRJNA665531_P_NODE_3613_length_593_cov_2.938462_g3382_i0 PRJNA665531 3613 593 2.938462 17.42507966 Nannochloropsis gaditana 72520 SAR_Eukaryotes SAR_Eukaryotes 332 9.52e-109   NR EWM26703.1 72520 g3382 i0 87.3 0.996627318718381 197 23 99.7 1 2 592 167 361 EWM26703.1 dihydrolipoamide dehydrogenase [Nannochloropsis gaditana] diamond 591 332 1 Eukaryota Sar     Eustigmatophyceae Eustigmatales Monodopsidaceae Nannochloropsis Nannochloropsis gaditana
32516219 32516219 PRJNA665531_P_NODE_20159_length_227_cov_5.824675_g19923_i0 PRJNA665531 20159 227 5.824675 13.22201225 Cladocopium goreaui 2562237 SAR_Eukaryotes SAR_Eukaryotes 56.6 3.88e-7   NR CAL1165036.1 2562237 g19923 i0 41.2 0.898678414096916 68 39 89.9 1 226 23 329 395 CAL1165036.1 unnamed protein product [Cladocopium goreaui] diamond 204 56.6 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Cladocopium Cladocopium goreaui

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;