RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA665531" and tax_clade = "Cyanobacteriota/Melainabacteria group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA665531 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5732845 5732845 PRJNA665531_P_NODE_18685_length_244_cov_0.900585_g18449_i0 PRJNA665531 18685 244 0.900585 2.1974274 Drouetiella sp. 3088174 Bacteria Bacteria 174 9.83e-49   NR HEY9731932.1 3088174 g18449 i0 100 0.983606557377049 80 0 98.4 0 242 3 277 356 HEY9731932.1 arylsulfatase [Drouetiella sp.] diamond 240 174 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oculatellales Oculatellaceae Drouetiella Drouetiella sp.
10833465 10833465 PRJNA665531_P_NODE_17309_length_250_cov_0.870056_g17073_i0 PRJNA665531 17309 250 0.870056 2.17514 Cyanophyceae 3028117 Bacteria Bacteria 102 8.02e-24   NR WP_263970667.1 1229172 g17073 i0 63.8 2.868 80 29 96 0 242 3 135 214 WP_263970667.1 homocysteine S-methyltransferase family protein [Leptolyngbya sp. KIOST-1] diamond 717 103 0.990291262135922 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. KIOST-1
30839760 30839760 PRJNA665531_P_NODE_18454_length_245_cov_0.895349_g18218_i0 PRJNA665531 18454 245 0.895349 2.19360505 Drouetiella sp. 3088174 Bacteria Bacteria 84.3 7.46e-17   NR HEY9734050.1 3088174 g18218 i0 59 0.955102040816327 78 32 95.5 0 240 7 311 388 HEY9734050.1 hypothetical protein [Drouetiella sp.] diamond 234 84.3 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oculatellales Oculatellaceae Drouetiella Drouetiella sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;