RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA665531" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 5 ✖

bioproject 1

  • PRJNA665531 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27112912 27112912 PRJNA665531_P_NODE_17562_length_249_cov_0.875000_g17326_i0 PRJNA665531 17562 249 0.875 2.17875 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 129 1.35e-36   NR MDO4870886.1 2026720 g17326 i0 78.4 0.891566265060241 74 16 89.2 0 222 1 35 108 MDO4870886.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 222 129 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
27271106 27271106 PRJNA665531_P_NODE_16523_length_254_cov_1.911602_g16287_i0 PRJNA665531 16523 254 1.911602 4.85546908 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 107 1.95e-25   NR MDO4874223.1 2044595 g16287 i0 98.1 0.637795275590551 54 1 63.8 0 254 93 250 303 MDO4874223.1 tyrosine--tRNA ligase [Candidatus Altimarinota bacterium] diamond 162 107 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29449606 29449606 PRJNA665531_P_NODE_19690_length_235_cov_3.419753_g19454_i0 PRJNA665531 19690 235 3.419753 8.03641955 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 121 7.14e-34   NR MDO4873847.1 2044595 g19454 i0 100 0.791489361702128 62 0 79.1 0 49 234 1 62 MDO4873847.1 HU family DNA-binding protein [Candidatus Altimarinota bacterium] diamond 186 121 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30934670 30934670 PRJNA665531_P_NODE_19094_length_242_cov_0.911243_g18858_i0 PRJNA665531 19094 242 0.911243 2.20520806 candidate division SR1 bacterium 2044938 Bacteria Bacteria 86.7 9.37e-18   NR MBB1579263.1 2044938 g18858 i0 94.2 0.644628099173554 52 3 64.5 0 43 198 119 170 MBB1579263.1 hypothetical protein [candidate division SR1 bacterium] diamond 156 86.7 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
32073007 32073007 PRJNA665531_P_NODE_18978_length_242_cov_1.822485_g18742_i0 PRJNA665531 18978 242 1.822485 4.4104137 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 55.1 5.21e-7   NR MBB1553829.1 2044595 g18742 i0 61.4 0.706611570247934 57 22 70.7 0 25 195 87 143 MBB1553829.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 171 55.1 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;