RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA664479" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA664479 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28186655 28186655 PRJNA664479_S_NODE_16406_length_164_cov_0.886957_g16330_i0 PRJNA664479 16406 164 0.886957 1.45460948 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 101 8.14e-26   NR XP_001025062.2 312017 g16330 i0 88.9 0.98780487804878 54 6 98.8 0 163 2 52 105 XP_001025062.2 40S ribosomal protein S24 [Tetrahymena thermophila SB210] diamond 162 101 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
28344718 28344718 PRJNA664479_S_NODE_14226_length_167_cov_1.296610_g14150_i0 PRJNA664479 14226 167 1.29661 2.1653387 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 97.8 4.13e-24   NR XP_004030146.1 5932 g14150 i0 88.9 0.970059880239521 54 6 97 0 165 4 109 162 XP_004030146.1 hypothetical protein IMG5_167040 [Ichthyophthirius multifiliis] diamond 162 97.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
28502647 28502647 PRJNA664479_S_NODE_14547_length_167_cov_0.864407_g14471_i0 PRJNA664479 14547 167 0.864407 1.44355969 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 99.4 2.0199999999999998e-24   NR XP_001019693.2 312017 g14471 i0 92.2 0.916167664670659 51 4 91.6 0 153 1 1 51 XP_001019693.2 60S ribosomal protein L6 [Tetrahymena thermophila SB210] diamond 153 99.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
29733755 29733755 PRJNA664479_S_NODE_4630_length_244_cov_2.666667_g4554_i0 PRJNA664479 4630 244 2.666667 6.50666748 Moneuplotes crassus 5936 SAR_Eukaryotes SAR_Eukaryotes 48.1 4.78e-4   NR CAI2387805.1 5936 g4554 i0 37 1.77049180327869 73 46 89.8 0 220 2 261 333 CAI2387805.1 unnamed protein product [Moneuplotes crassus] diamond 432 48.1 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;