RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA664479" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA664479 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28261979 28261979 PRJNA664479_S_NODE_466_length_664_cov_2.814634_g402_i0 PRJNA664479 466 664 2.814634 18.68916976 Gammaretrovirus 153135 Viruses Viruses 447 1.4099999999999999e-147   NR AAA79247.1 11786 g402 i0 98.6 10.9834337349398 221 3 99.8 0 664 2 140 360 AAA79247.1 putative reverse transcriptase [Murine leukemia virus] diamond 7293 451 0.991130820399113 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
28861930 28861930 PRJNA664479_S_NODE_3168_length_284_cov_2.910638_g3092_i0 PRJNA664479 3168 284 2.910638 8.26621192 Gammaretrovirus 153135 Viruses Viruses 184 1.23e-51   NR NP_057933.2 11801 g3092 i0 96.8 7.94366197183099 94 3 99.3 0 282 1 1218 1311 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 2256 184 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30429419 30429419 PRJNA664479_S_NODE_5253_length_233_cov_1.896739_g5177_i0 PRJNA664479 5253 233 1.896739 4.41940187 Moloney murine leukemia virus 11801 Viruses Viruses 160 1.8499999999999993e-43   NR NP_057933.2 11801 g5177 i0 98.7 1.98283261802575 77 1 99.1 0 233 3 1132 1208 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 462 160 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;