RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA664479" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA664479 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26732894 26732894 PRJNA664479_S_NODE_11481_length_180_cov_0.717557_g11405_i0 PRJNA664479 11481 180 0.717557 1.2916026 Phycisphaerales bacterium 2052180 Bacteria Bacteria 42 0.0298   NR GIW73795.1 2052180 g11405 i0 47.7 0.733333333333333 44 22 73.3 1 148 17 56 98 GIW73795.1 MAG: hypothetical protein KatS3mg103_0317 [Phycisphaerales bacterium] diamond 132 42 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
29892100 29892100 PRJNA664479_S_NODE_5351_length_232_cov_0.918033_g5275_i0 PRJNA664479 5351 232 0.918033 2.12983656 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.4 0.0217   NR HKE01096.1 2026780 g5275 i0 35.8 0.866379310344828 67 40 82.8 2 39 230 13 79 HKE01096.1 PH domain-containing protein [Planctomycetota bacterium] diamond 201 42.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31345517 31345517 PRJNA664479_S_NODE_19056_length_161_cov_0.857143_g18980_i0 PRJNA664479 19056 161 0.857143 1.38000023 Gemmataceae bacterium 2052164 Bacteria Bacteria 43.5 0.00655   NR HVS39311.1 2052164 g18980 i0 47.1 0.950310559006211 51 25 95 1 4 156 16 64 HVS39311.1 MFS transporter [Gemmataceae bacterium] diamond 153 43.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
32073006 32073006 PRJNA664479_S_NODE_4558_length_246_cov_0.923858_g4482_i0 PRJNA664479 4558 246 0.923858 2.27269068 Phycisphaerales bacterium 2052180 Bacteria Bacteria 43.5 0.00377   NR MFM8783593.1 2052180 g4482 i0 55 0.48780487804878 40 15 45.1 1 51 161 8 47 MFM8783593.1 hypothetical protein [Phycisphaerales bacterium] diamond 120 43.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;