RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA663960" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA663960 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29745876 29745876 PRJNA663960_S_NODE_9630_length_337_cov_4.596552_g9394_i0 PRJNA663960 9630 337 4.596552 15.49038024 Poaceae 4479 Plants Plants 44.3 0.032   NR RLN04549.1 4540 g9394 i0 35.8 1.41543026706231 53 34 47.2 0 163 321 425 477 RLN04549.1 serine/threonine-protein kinase-like protein CCR4 [Panicum miliaceum] diamond 477 44.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum miliaceum
32799369 32799369 PRJNA663960_S_NODE_21120_length_259_cov_3.915094_g20884_i0 PRJNA663960 21120 259 3.915094 10.14009346 Oryza meyeriana var. granulata 110450 Plants Plants 42 0.0221   NR KAF0903135.1 110450 g20884 i0 55.9 0.393822393822394 34 14 38.2 1 193 95 52 85 KAF0903135.1 hypothetical protein E2562_025722 [Oryza meyeriana var. granulata] diamond 102 42 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza meyeriana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;