RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA663960" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA663960 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27429359 27429359 PRJNA663960_S_NODE_27943_length_229_cov_2.241758_g27707_i0 PRJNA663960 27943 229 2.241758 5.13362582 Littorina littorea 31216 Mollusca Mollusca 42.4 0.0429   NR QNL15284.1 31216 g27707 i0 39.2 0.668122270742358 51 31 66.8 0 72 224 653 703 QNL15284.1 mitogen-activated protein kinase kinase kinase 8 [Littorina littorea] diamond 153 42.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina littorea
29986684 29986684 PRJNA663960_S_NODE_42131_length_187_cov_5.878571_g41895_i0 PRJNA663960 42131 187 5.878571 10.99292777 Mytilus edulis 6550 Mollusca Mollusca 42 0.0328   NR CAG2187267.1 6550 g41895 i0 47.6 0.67379679144385 42 21 65.8 1 65 187 192 233 CAG2187267.1 unnamed protein product [Mytilus edulis] diamond 126 42 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
30492265 30492265 PRJNA663960_S_NODE_47073_length_177_cov_1.176923_g46837_i0 PRJNA663960 47073 177 1.176923 2.08315371 Mytilus coruscus 42192 Mollusca Mollusca 40.8 0.0476   NR CAC5360502.1 42192 g46837 i0 34 0.796610169491525 47 31 79.7 0 160 20 111 157 CAC5360502.1 unnamed protein product [Mytilus coruscus] diamond 141 40.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus coruscus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;