RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where analysis = "diamond", bioproject = "PRJNA662254" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA662254 · 10 ✖

analysis 1

  • diamond · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4456230 4456230 PRJNA662254_P_NODE_47724_length_250_cov_0.870056_g47073_i0 PRJNA662254 47724 250 0.870056 2.17514 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 126 3.54e-32   NR MBP7075187.1 2047756 g47073 i0 77.1 2.004 83 19 99.6 0 249 1 158 240 MBP7075187.1 ribosome biogenesis GTPase Der [Rhabdochlamydiaceae bacterium] diamond 501 126 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
28155482 28155482 PRJNA662254_P_NODE_63725_length_242_cov_0.911243_g63074_i0 PRJNA662254 63725 242 0.911243 2.20520806 Parachlamydiales bacterium 2052178 Bacteria Bacteria 84.7 1.46e-17   NR MBF8262602.1 2052178 g63074 i0 53.8 0.991735537190083 80 37 99.2 0 2 241 115 194 MBF8262602.1 conserved putative rane protein [Parachlamydiales bacterium] diamond 240 84.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
28861925 28861925 PRJNA662254_P_NODE_61768_length_243_cov_0.905882_g61117_i0 PRJNA662254 61768 243 0.905882 2.20129326 Parachlamydiales 1963360 Bacteria Bacteria 80.9 1.16e-15   NR HEY2811319.1 2047756 g61117 i0 63.2 1.53086419753086 57 21 70.4 0 30 200 369 425 HEY2811319.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 372 81.3 0.995079950799508 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
28976321 28976321 PRJNA662254_P_NODE_56768_length_245_cov_0.895349_g56117_i0 PRJNA662254 56768 245 0.895349 2.19360505 Waddlia chondrophila 71667 Bacteria Bacteria 50.1 9.92e-5   NR WP_013182056.1 71667 g56117 i0 32.5 2.9265306122449 77 52 94.3 0 2 232 165 241 WP_013182056.1 hypothetical protein [Waddlia chondrophila] diamond 717 50.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila
29860264 29860264 PRJNA662254_P_NODE_56811_length_245_cov_0.895349_g56160_i0 PRJNA662254 56811 245 0.895349 2.19360505 Chlamydiota bacterium 2081524 Bacteria Bacteria 112 1.17e-27   NR MEI6241894.1 2081524 g56160 i0 61.7 0.991836734693878 81 31 99.2 0 243 1 92 172 MEI6241894.1 hypothetical protein [Chlamydiota bacterium] diamond 243 112 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30808163 30808163 PRJNA662254_P_NODE_62854_length_242_cov_0.911243_g62203_i0 PRJNA662254 62854 242 0.911243 2.20520806 Waddlia chondrophila 71667 Bacteria Bacteria 75.5 2.98e-14   NR WP_013182841.1 71667 g62203 i0 60.4 0.65702479338843 53 21 65.7 0 203 45 41 93 WP_013182841.1 FkbM family methyltransferase [Waddlia chondrophila] diamond 159 75.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila
31135914 31135914 PRJNA662254_P_NODE_61095_length_243_cov_0.905882_g60444_i0 PRJNA662254 61095 243 0.905882 2.20129326 Parachlamydia 83551 Bacteria Bacteria 139 2.83e-39   NR WP_036746222.1 83552 g60444 i0 81.3 5.92592592592593 80 15 98.8 0 2 241 111 190 WP_036746222.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Parachlamydia acanthamoebae] diamond 1440 139 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
31768700 31768700 PRJNA662254_P_NODE_64757_length_241_cov_0.916667_g64106_i0 PRJNA662254 64757 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 130 3.2099999999999995e-35   NR HSW86414.1 2047756 g64106 i0 78.5 3.93360995850622 79 17 98.3 0 239 3 129 207 HSW86414.1 type III secretion system export apparatus subunit SctR [Rhabdochlamydiaceae bacterium] diamond 948 131 0.99236641221374 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
31977995 31977995 PRJNA662254_P_NODE_65358_length_241_cov_0.916667_g64707_i0 PRJNA662254 65358 241 0.916667 2.20916747 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 82.4 4.26e-17   NR HUD01966.1 2047756 g64707 i0 70.4 0.672199170124481 54 16 67.2 0 2 163 167 220 HUD01966.1 HAD domain-containing protein [Rhabdochlamydiaceae bacterium] diamond 162 82.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
32136323 32136323 PRJNA662254_P_NODE_51778_length_248_cov_0.880000_g51127_i0 PRJNA662254 51778 248 0.88 2.1824 Candidatus Protochlamydia phocaeensis 1414722 Bacteria Bacteria 82.4 4.23e-16   NR WP_068470263.1 1414722 g51127 i0 51.9 0.931451612903226 77 37 93.1 0 232 2 501 577 WP_068470263.1 NADH-quinone oxidoreductase subunit L [Candidatus Protochlamydia phocaeensis] diamond 231 82.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;