RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA662254" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA662254 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9556733 9556733 PRJNA662254_P_NODE_22088_length_350_cov_1.003610_g21437_i0 PRJNA662254 22088 350 1.00361 3.512635 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 151 6.14e-42   NR AAK43737.1 5861 g21437 i0 63.6 11.5114285714286 107 39 91.7 0 3 323 127 233 AAK43737.1 fructose 1,6-bisphosphate aldolase, partial [Plasmodium yoelii] diamond 4029 151 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
22305521 22305521 PRJNA662254_P_NODE_25918_length_324_cov_4.836653_g25267_i0 PRJNA662254 25918 324 4.836653 15.67075572 Hepatocystis sp. ex Piliocolobus tephrosceles 2600580 SAR_Eukaryotes SAR_Eukaryotes 140 8.139999999999998e-41   NR VWU51230.1 2600580 g25267 i0 68 2.86111111111111 103 32 95.4 1 314 6 1 102 VWU51230.1 60S ribosomal protein L44 [Hepatocystis sp. ex Piliocolobus tephrosceles] diamond 927 140 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Hepatocystis Hepatocystis sp. ex Piliocolobus tephrosceles
27965775 27965775 PRJNA662254_P_NODE_46705_length_250_cov_0.870056_g46054_i0 PRJNA662254 46705 250 0.870056 2.17514 Cryptosporidium hominis TU5 237895 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0209   NR XP_665661.1 353151 g46054 i0 34.4 0.768 64 40 74.4 1 241 56 72 135 XP_665661.1 hypothetical protein [Cryptosporidium hominis TU502] diamond 192 43.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium hominis
31472098 31472098 PRJNA662254_P_NODE_53016_length_247_cov_0.885057_g52365_i0 PRJNA662254 53016 247 0.885057 2.18609079 Besnoitia besnoiti 94643 SAR_Eukaryotes SAR_Eukaryotes 76.3 6.15e-14   NR XP_029222219.1 94643 g52365 i0 45.1 0.995951417004049 82 44 98.4 1 245 3 1668 1749 XP_029222219.1 hypothetical protein BESB_005510 [Besnoitia besnoiti] diamond 246 76.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;