RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA661142" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA661142 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27618617 27618617 PRJNA661142_P_NODE_11924_length_165_cov_0.879310_g11859_i0 PRJNA661142 11924 165 0.87931 1.4508615 Brassica carinata 52824 Plants Plants 76.3 1.5e-14   NR KAG2264841.1 52824 g11859 i0 75 0.945454545454545 52 13 94.5 0 158 3 319 370 KAG2264841.1 hypothetical protein Bca52824_071920 [Brassica carinata] diamond 156 76.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica carinata
29398764 29398764 PRJNA661142_P_NODE_12589_length_162_cov_0.884956_g12524_i0 PRJNA661142 12589 162 0.884956 1.43362872 Brassicaceae 3700 Plants Plants 76.3 8.7e-15   NR XP_056864106.1 3726 g12524 i0 66.7 9.77777777777778 48 16 88.9 0 146 3 86 133 XP_056864106.1 uncharacterized protein LOC130511229 [Raphanus sativus] diamond 1584 76.6 0.996083550913838 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Raphanus Raphanus sativus
30144240 30144240 PRJNA661142_P_NODE_12632_length_161_cov_0.910714_g12567_i0 PRJNA661142 12632 161 0.910714 1.46624954 Brassica oleracea var. oleracea 109376 Plants Plants 81.3 1.36e-16   NR XP_013608335.1 109376 g12567 i0 66 7.90062111801242 53 18 98.8 0 161 3 230 282 XP_013608335.1 PREDICTED: uncharacterized protein LOC106315112 [Brassica oleracea var. oleracea] diamond 1272 81.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica oleracea
31313714 31313714 PRJNA661142_P_NODE_12435_length_162_cov_0.902655_g12370_i0 PRJNA661142 12435 162 0.902655 1.4623011 Brassica cretica 69181 Plants Plants 41.6 0.0319   NR KAF2563722.1 69181 g12370 i0 58.3 1.33333333333333 36 15 66.7 0 54 161 482 517 KAF2563722.1 hypothetical protein F2Q70_00017176 [Brassica cretica] diamond 216 41.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica cretica
32421039 32421039 PRJNA661142_P_NODE_12839_length_155_cov_2.028302_g12774_i0 PRJNA661142 12839 155 2.028302 3.1438681 Oryza sativa Japonica Group 39947 Plants Plants 87 2.72e-18   NR AAT73651.1 39947 g12774 i0 93.8 0.929032258064516 48 3 92.9 0 3 146 279 326 AAT73651.1 unknown protein [Oryza sativa Japonica Group] diamond 144 87 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;