RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA661142" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA661142 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4456084 4456084 PRJNA661142_P_NODE_8944_length_243_cov_1.577320_g8879_i0 PRJNA661142 8944 243 1.57732 3.8328876 Pseudomonadati 3379134 Bacteria Bacteria 91.7 2.33e-19   NR HEU4558849.1 2029185 g8879 i0 73.7 3.4320987654321 57 15 70.4 0 243 73 542 598 HEU4558849.1 ATP-binding protein [Longimicrobium sp.] diamond 834 91.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28060465 28060465 PRJNA661142_P_NODE_9905_length_218_cov_0.905325_g9840_i0 PRJNA661142 9905 218 0.905325 1.9736085 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 40.8 0.0198   NR MES2360116.1 2026742 g9840 i0 50 0.577981651376147 42 21 57.8 0 128 3 7 48 MES2360116.1 hypothetical protein [Gemmatimonadota bacterium] diamond 126 40.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28912756 28912756 PRJNA661142_P_NODE_12448_length_162_cov_0.902655_g12383_i0 PRJNA661142 12448 162 0.902655 1.4623011 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 85.5 1.09e-17   NR MEX2181912.1 2026741 g12383 i0 88.9 1 54 6 100 0 162 1 145 198 MEX2181912.1 AAA family ATPase [Gemmatimonadaceae bacterium] diamond 162 85.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29323365 29323365 PRJNA661142_P_NODE_9029_length_241_cov_1.328125_g8964_i0 PRJNA661142 9029 241 1.328125 3.20078125 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 109 2.43e-27   NR HYX83116.1 2448054 g8964 i0 63.3 3.93360995850622 79 29 98.3 0 239 3 84 162 HYX83116.1 HAMP domain-containing sensor histidine kinase [Gemmatimonadales bacterium] diamond 948 109 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;