RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA661142" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA661142 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22305407 22305407 PRJNA661142_P_NODE_4298_length_376_cov_2.418960_g4233_i0 PRJNA661142 4298 376 2.4189600000000002 9.0952896 Truepera radiovictrix 332249 Bacteria Bacteria 207 1.9e-63   NR WP_013177200.1 332249 g4233 i0 80.2 1.93085106382979 121 24 96.5 0 2 364 214 334 WP_013177200.1 Gfo/Idh/MocA family protein [Truepera radiovictrix] diamond 726 207 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
26954662 26954662 PRJNA661142_P_NODE_5902_length_317_cov_11.287313_g5837_i0 PRJNA661142 5902 317 11.287313 35.78078221 Deinococcus metalli 1141878 Bacteria Bacteria 114 1.75e-28   NR WP_184108652.1 1141878 g5837 i0 64.2 3.49211356466877 95 33 89 1 284 3 1 95 WP_184108652.1 FAD:protein FMN transferase [Deinococcus metalli] diamond 1107 114 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus metalli
29638880 29638880 PRJNA661142_P_NODE_8050_length_265_cov_1.643519_g7985_i0 PRJNA661142 8050 265 1.643519 4.35532535 Deinococcus metallilatus 1211322 Bacteria Bacteria 119 3.66e-30   NR WP_146719734.1 1211322 g7985 i0 76 0.849056603773585 75 18 84.9 0 41 265 1 75 WP_146719734.1 Gfo/Idh/MocA family protein [Deinococcus metallilatus] diamond 225 119 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus metallilatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;