RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA658591" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA658591 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18477796 18477796 PRJNA658591_S_NODE_8455_length_171_cov_2.696721_g8392_i0 PRJNA658591 8455 171 2.696721 4.61139291 Sanguina aurantia 2578422 Plants Plants 94 1.25e-20   NR MEW5299832.1 2578422 g8392 i0 75 1.96491228070175 56 14 98.2 0 170 3 268 323 MEW5299832.1 hypothetical protein [Sanguina aurantia] diamond 336 94 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Sanguina Sanguina aurantia
28198808 28198808 PRJNA658591_S_NODE_9206_length_167_cov_1.313559_g9143_i0 PRJNA658591 9206 167 1.313559 2.19364353 Chlorophyta 3041 Plants Plants 82.4 1.36e-16   NR KAG2493544.1 47281 g9143 i0 65.5 2.96407185628743 55 19 98.8 0 3 167 335 389 KAG2493544.1 hypothetical protein HYH03_008358 [Edaphochlamys debaryana] diamond 495 82.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
28420224 28420224 PRJNA658591_S_NODE_9046_length_168_cov_0.873950_g8983_i0 PRJNA658591 9046 168 0.87395 1.468236 Eukaryota 2759 Plants Plants 70.1 3.02e-12   NR XP_002952694.1 3068 g8983 i0 77.8 11.3928571428571 36 8 64.3 0 108 1 17 52 XP_002952694.1 4-hydroxyphenylpyruvate dioxygenase [Volvox carteri f. nagariensis] diamond 1914 70.5 0.994326241134752 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
29209504 29209504 PRJNA658591_S_NODE_6389_length_189_cov_2.992857_g6326_i0 PRJNA658591 6389 189 2.992857 5.65649973 Chlorophyta 3041 Plants Plants 77.4 1.05e-14   NR KAK3253051.1 36881 g6326 i0 59.7 4.73015873015873 62 25 98.4 0 2 187 314 375 KAK3253051.1 hypothetical protein CYMTET_37680 [Cymbomonas tetramitiformis] diamond 894 77.8 0.994858611825193 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis
29240986 29240986 PRJNA658591_S_NODE_10909_length_157_cov_2.259259_g10846_i0 PRJNA658591 10909 157 2.259259 3.54703663 root 1 Root_unresolved Root_unresolved 82.4 1.16e-16   NR KAG2483093.1 47281 g10846 i0 73.5 7.35668789808917 49 13 93.6 0 155 9 244 292 KAG2483093.1 hypothetical protein HYH03_018031 [Edaphochlamys debaryana] diamond 1155 83.2 0.990384615384615 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
29670408 29670408 PRJNA658591_S_NODE_2830_length_257_cov_16.668269_g2767_i0 PRJNA658591 2830 257 16.668269 42.83745133 Ostreococcus tauri 70448 Plants Plants 81.6 3.88e-16   NR XP_022840204.1 70448 g2767 i0 66.7 3.15175097276265 54 18 63 0 255 94 260 313 XP_022840204.1 G-protein beta WD-40 repeat [Ostreococcus tauri] diamond 810 81.6 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus tauri
30030492 30030492 PRJNA658591_S_NODE_9171_length_167_cov_1.754237_g9108_i0 PRJNA658591 9171 167 1.754237 2.92957579 Eukaryota 2759 Plants Plants 77 1.08e-14   NR KAF5827513.1 3046 g9108 i0 60 28.437125748503 55 22 98.8 0 166 2 106 160 KAF5827513.1 hypothetical protein DUNSADRAFT_538 [Dunaliella salina] diamond 4749 77 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
30618383 30618383 PRJNA658591_S_NODE_4513_length_216_cov_1.137725_g4450_i0 PRJNA658591 4513 216 1.137725 2.457486 Gonium pectorale 33097 Plants Plants 107 3.39e-25   NR KXZ56375.1 33097 g4450 i0 79.7 0.888888888888889 64 13 88.9 0 195 4 438 501 KXZ56375.1 hypothetical protein GPECTOR_1g332 [Gonium pectorale] diamond 192 107 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale
30946841 30946841 PRJNA658591_S_NODE_7554_length_178_cov_5.232558_g7491_i0 PRJNA658591 7554 178 5.232558 9.31395324 root 1 Root_unresolved Root_unresolved 114 1.34e-27   NR XP_002500915.1 296587 g7491 i0 84.5 7.93820224719101 58 9 97.8 0 177 4 778 835 XP_002500915.1 predicted protein [Micromonas commoda] diamond 1413 115 0.991304347826087 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
31863465 31863465 PRJNA658591_S_NODE_4197_length_221_cov_3.098837_g4134_i0 PRJNA658591 4197 221 3.098837 6.84842977 Viridiplantae 33090 Plants Plants 57.4 7.19e-9   NR XP_007514946.1 41875 g4134 i0 56.5 1.50678733031674 46 20 62.4 0 16 153 7 52 XP_007514946.1 predicted protein [Bathycoccus prasinos] diamond 333 57.4 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
32168021 32168021 PRJNA658591_S_NODE_2498_length_271_cov_1.427928_g2435_i0 PRJNA658591 2498 271 1.427928 3.86968488 Monoraphidium neglectum 145388 Plants Plants 67.4 2.3e-11   NR XP_013899290.1 145388 g2435 i0 54.5 0.608856088560886 55 25 60.9 0 269 105 138 192 XP_013899290.1 hypothetical protein MNEG_7690 [Monoraphidium neglectum] diamond 165 67.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;