RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA657860" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA657860 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28092021 28092021 PRJNA657860_P_NODE_1545_length_259_cov_2.567568_g1489_i0 PRJNA657860 1545 259 2.567568 6.65000112 Kappamyces sp. JEL 2040833 Fungi Fungi 99 7.83e-22   NR KAJ3301963.1 2724216 g1489 i0 66.2 0.752895752895753 65 22 75.3 0 256 62 513 577 KAJ3301963.1 Mitochondrial 10-formyltetrahydrofolate dehydrogenase [Kappamyces sp. JEL0829] diamond 195 99 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Kappamycetaceae Kappamyces Kappamyces sp. JEL0829
29335690 29335690 PRJNA657860_P_NODE_489_length_498_cov_1.661605_g434_i0 PRJNA657860 489 498 1.661605 8.2747929 root 1 Root_unresolved Root_unresolved 269 6.37e-88   NR KAI9026238.1 82268 g434 i0 80.5 3.71084337349398 154 30 92.8 0 5 466 154 307 KAI9026238.1 putative mitochondrial ADP/ATP translocase [Hyaloraphidium curvatum] diamond 1848 271 0.992619926199262 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
31452600 31452600 PRJNA657860_P_NODE_516_length_486_cov_1.966592_g460_i0 PRJNA657860 516 486 1.966592 9.55763712 Chytridiomycetes 451435 Fungi Fungi 203 6.63e-62   NR KAI8811600.1 109936 g460 i0 75.8 2.42592592592593 128 30 79 1 102 485 7 133 KAI8811600.1 putative mitochondrial ADP/ATP translocase [Cladochytrium replicatum] diamond 1179 203 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium replicatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;