RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA657860" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA657860 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28660492 28660492 PRJNA657860_P_NODE_3127_length_167_cov_0.884615_g3071_i0 PRJNA657860 3127 167 0.884615 1.47730705 Engystomops pustulosus 76066 Chordata Chordata 58.2 4.12e-8   NR KAG8566174.1 76066 g3071 i0 56.6 21.1437125748503 53 23 95.2 0 9 167 1 53 KAG8566174.1 hypothetical protein GDO81_013129 [Engystomops pustulosus] diamond 3531 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
29291844 29291844 PRJNA657860_P_NODE_2209_length_204_cov_0.868263_g2153_i0 PRJNA657860 2209 204 0.868263 1.77125652 Elephas maximus indicus 99487 Chordata Chordata 42.4 0.0285   NR XP_049736108.1 99487 g2153 i0 35.2 0.794117647058823 54 33 79.4 1 3 164 122 173 XP_049736108.1 synaptophysin-like protein 2 isoform X1 [Elephas maximus indicus] diamond 162 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Proboscidea Elephantidae Elephas Elephas maximus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;