RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA657860" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA657860 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24851711 24851711 PRJNA657860_P_NODE_380_length_581_cov_1.966912_g327_i0 PRJNA657860 380 581 1.966912 11.42775872 Hymenobacter sp. 15J16-1T3B 2886941 Bacteria Bacteria 192 1.0999999999999999e-58   NR WP_227765649.1 2886941 g327 i0 58.5 3.80034423407917 188 73 95 3 1 552 18 204 WP_227765649.1 NAD(P)H:quinone oxidoreductase [Hymenobacter sp. 15J16-1T3B] diamond 2208 192 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. 15J16-1T3B
28281311 28281311 PRJNA657860_P_NODE_2046_length_213_cov_1.426136_g1990_i0 PRJNA657860 2046 213 1.426136 3.03766968 Bacteroidota bacterium 1898104 Bacteria Bacteria 87.8 3.19e-18   NR MDP4216039.1 1898104 g1990 i0 63.2 1.91549295774648 68 25 95.8 0 208 5 193 260 MDP4216039.1 S53 family peptidase [Bacteroidota bacterium] diamond 408 87.8 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
32641776 32641776 PRJNA657860_P_NODE_2540_length_188_cov_0.986755_g2484_i0 PRJNA657860 2540 188 0.986755 1.8550994 Aequorivita sp. 1872390 Bacteria Bacteria 123 2.48e-33   NR PHR11930.1 1872390 g2484 i0 95.2 1.97872340425532 62 3 98.9 0 186 1 80 141 PHR11930.1 MAG: hypothetical protein COA40_09190, partial [Aequorivita sp.] diamond 372 123 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Aequorivita Aequorivita sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;