RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA657860" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA657860 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19752477 19752477 PRJNA657860_P_NODE_896_length_351_cov_1.187898_g840_i0 PRJNA657860 896 351 1.187898 4.16952198 Limulus polyphemus 6850 Arthropoda Arthropoda 200 7.54e-60   NR XP_022243606.1 6850 g840 i0 77.6 0.991452991452991 116 26 99.1 0 350 3 130 245 XP_022243606.1 aldehyde dehydrogenase, mitochondrial-like [Limulus polyphemus] diamond 348 200 1 Eukaryota Opisthokonta Metazoa Arthropoda Merostomata Xiphosura Limulidae Limulus Limulus polyphemus
28060435 28060435 PRJNA657860_P_NODE_525_length_480_cov_1.821670_g469_i0 PRJNA657860 525 480 1.82167 8.744016 Palaemon carinicauda 392227 Arthropoda Arthropoda 138 5.02e-36   NR XP_068221602.1 392227 g469 i0 45.4 1.01875 163 78 100 6 480 1 184 338 XP_068221602.1 uncharacterized protein [Palaemon carinicauda] diamond 489 138 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Palaemonidae Palaemon Palaemon carinicauda
30586734 30586734 PRJNA657860_P_NODE_373_length_585_cov_2.257299_g320_i0 PRJNA657860 373 585 2.257299 13.20519915 Panonychus citri 50023 Arthropoda Arthropoda 76.6 2.4e-13   NR AFD36889.1 50023 g320 i0 36.6 0.728205128205128 142 54 70.3 3 583 173 104 214 AFD36889.1 glutathione S-transferase zeta [Panonychus citri] diamond 426 76.6 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Trombidiformes Tetranychidae Panonychus Panonychus citri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;