RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA657860" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA657860 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26638102 26638102 PRJNA657860_P_NODE_1401_length_275_cov_1.432773_g1345_i0 PRJNA657860 1401 275 1.432773 3.94012575 Acidobacteriota bacterium 1978231 Bacteria Bacteria 59.3 7.94e-8   NR MBX3294083.1 1978231 g1345 i0 36.3 0.992727272727273 91 56 98.2 2 6 275 149 238 MBX3294083.1 hypothetical protein [Acidobacteriota bacterium] diamond 273 59.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
26796580 26796580 PRJNA657860_P_NODE_3321_length_162_cov_0.936000_g3265_i0 PRJNA657860 3321 162 0.936 1.51632 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 45.1 0.00185   NR HZN07533.1 2283092 g3265 i0 47.6 1.48148148148148 42 22 77.8 0 2 127 70 111 HZN07533.1 methyltransferase [Pyrinomonadaceae bacterium] diamond 240 45.1 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;