RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA657860" and tax_clade = "Embryophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 17 ✖

bioproject 1

  • PRJNA657860 · 17 ✖

analysis 1

  • diamond · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5728881 5728881 PRJNA657860_P_NODE_1825_length_232_cov_1.194872_g1769_i0 PRJNA657860 1825 232 1.194872 2.77210304 Carex littledalei 544730 Plants Plants 153 2.29e-44   NR KAF3335541.1 544730 g1769 i0 93.5 0.995689655172414 77 5 99.6 0 1 231 114 190 KAF3335541.1 beta-expansin 1 [Carex littledalei] diamond 231 153 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei
12104797 12104797 PRJNA657860_P_NODE_2390_length_194_cov_0.961783_g2334_i0 PRJNA657860 2390 194 0.961783 1.86585902 Carex littledalei 544730 Plants Plants 87.8 4.21e-19   NR KAF3330587.1 544730 g2334 i0 82.8 0.989690721649485 64 11 99 0 194 3 103 166 KAF3330587.1 Vesicle transport protein SEC20 [Carex littledalei] diamond 192 87.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei
14654375 14654375 PRJNA657860_P_NODE_1172_length_306_cov_1.211896_g1116_i0 PRJNA657860 1172 306 1.211896 3.70840176 Rhynchospora 46332 Plants Plants 216 1.5899999999999998e-66   NR KAJ3686549.1 198213 g1116 i0 93.1 2 102 7 100 0 1 306 315 416 KAJ3686549.1 hypothetical protein LUZ61_015713 [Rhynchospora tenuis] diamond 612 216 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Rhynchospora Rhynchospora tenuis
27207580 27207580 PRJNA657860_P_NODE_2782_length_178_cov_1.106383_g2726_i0 PRJNA657860 2782 178 1.106383 1.96936174 Rhynchospora pubera 906938 Plants Plants 79 4.94e-17   NR KAJ4769702.1 906938 g2726 i0 66 1.68539325842697 50 17 84.3 0 177 28 78 127 KAJ4769702.1 Plant invertase/pectin methylesterase inhibitor superfamily [Rhynchospora pubera] diamond 300 79 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Rhynchospora Rhynchospora pubera
27397598 27397598 PRJNA657860_P_NODE_2723_length_180_cov_1.342657_g2667_i0 PRJNA657860 2723 180 1.342657 2.4167826 Carex littledalei 544730 Plants Plants 122 2.9e-34   NR KAF3333351.1 544730 g2667 i0 98.3 0.966666666666667 58 1 96.7 0 5 178 72 129 KAF3333351.1 protein RALF-like 19 [Carex littledalei] diamond 174 122 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei
29386733 29386733 PRJNA657860_P_NODE_1689_length_244_cov_1.483092_g1633_i0 PRJNA657860 1689 244 1.483092 3.61874448 Rhynchospora tenuis 198213 Plants Plants 106 1.04e-24   NR KAJ3687393.1 198213 g1633 i0 63.2 0.934426229508197 76 28 93.4 0 6 233 433 508 KAJ3687393.1 hypothetical protein LUZ61_016557 [Rhynchospora tenuis] diamond 228 106 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Rhynchospora Rhynchospora tenuis
29512750 29512750 PRJNA657860_P_NODE_1530_length_260_cov_1.520179_g1474_i0 PRJNA657860 1530 260 1.520179 3.9524654 Carex littledalei 544730 Plants Plants 130 4.27e-36   NR KAF3321925.1 544730 g1474 i0 70.9 2.97692307692308 86 25 99.2 0 258 1 33 118 KAF3321925.1 hypothetical protein FCM35_KLT14141 [Carex littledalei] diamond 774 130 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei
30271204 30271204 PRJNA657860_P_NODE_2072_length_211_cov_1.563218_g2016_i0 PRJNA657860 2072 211 1.563218 3.29838998 Morus notabilis 981085 Plants Plants 45.1 0.00326   NR EXC30491.1 981085 g2016 i0 82.6 1.93364928909953 23 4 32.7 0 206 138 226 248 EXC30491.1 putative pectinesterase/pectinesterase inhibitor 13 [Morus notabilis] diamond 408 45.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Moraceae Morus Morus notabilis
30649849 30649849 PRJNA657860_P_NODE_2693_length_181_cov_1.305556_g2637_i0 PRJNA657860 2693 181 1.305556 2.36305636 Carex littledalei 544730 Plants Plants 108 5.28e-26   NR KAF3325623.1 544730 g2637 i0 95 0.994475138121547 60 3 99.4 0 2 181 114 173 KAF3325623.1 sugar carrier protein C-like protein [Carex littledalei] diamond 180 108 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei
30776569 30776569 PRJNA657860_P_NODE_2314_length_198_cov_0.956522_g2258_i0 PRJNA657860 2314 198 0.956522 1.89391356 Rhynchospora tenuis 198213 Plants Plants 59.3 2.99e-8   NR KAJ3687393.1 198213 g2258 i0 66.7 2.72727272727273 60 12 81.8 2 37 198 1 58 KAJ3687393.1 hypothetical protein LUZ61_016557 [Rhynchospora tenuis] diamond 540 59.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Rhynchospora Rhynchospora tenuis
31186921 31186921 PRJNA657860_P_NODE_1635_length_249_cov_1.773585_g1579_i0 PRJNA657860 1635 249 1.773585 4.41622665 Rhynchospora pubera 906938 Plants Plants 80.5 1.71e-15   NR KAJ4769701.1 906938 g1579 i0 53.2 2.89156626506024 79 37 95.2 0 12 248 80 158 KAJ4769701.1 Pectinesterase [Rhynchospora pubera] diamond 720 80.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Rhynchospora Rhynchospora pubera
31579068 31579068 PRJNA657860_P_NODE_3656_length_154_cov_0.905983_g3600_i0 PRJNA657860 3656 154 0.905983 1.39521382 Cyperaceae 4609 Plants Plants 82.4 6.6e-18   NR KAF3321925.1 544730 g3600 i0 84.8 1.81168831168831 46 7 89.6 0 152 15 134 179 KAF3321925.1 hypothetical protein FCM35_KLT14141 [Carex littledalei] diamond 279 82.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei
32547759 32547759 PRJNA657860_P_NODE_1719_length_241_cov_1.328431_g1663_i0 PRJNA657860 1719 241 1.328431 3.20151871 Rhynchospora breviuscula 2022672 Plants Plants 50.8 2.66e-5   NR KAJ1688476.1 2022672 g1663 i0 82.1 0.697095435684647 28 5 34.9 0 2 85 162 189 KAJ1688476.1 hypothetical protein LUZ63_019866 [Rhynchospora breviuscula] diamond 168 50.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Rhynchospora Rhynchospora breviuscula
32610551 32610551 PRJNA657860_P_NODE_3700_length_152_cov_1.686957_g3644_i0 PRJNA657860 3700 152 1.686957 2.56417464 Carex littledalei 544730 Plants Plants 84.7 1.64e-17   NR KAF3325623.1 544730 g3644 i0 79.6 0.967105263157895 49 10 96.7 0 148 2 337 385 KAF3325623.1 sugar carrier protein C-like protein [Carex littledalei] diamond 147 84.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei
32641775 32641775 PRJNA657860_P_NODE_1120_length_315_cov_1.381295_g1064_i0 PRJNA657860 1120 315 1.381295 4.35107925 Lolium multiflorum 4521 Plants Plants 55.5 2.36e-6   NR KAK1615074.1 4521 g1064 i0 51.1 0.447619047619048 47 22 43.8 1 187 50 243 289 KAK1615074.1 hypothetical protein QYE76_020591 [Lolium multiflorum] diamond 141 55.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium multiflorum
32641777 32641777 PRJNA657860_P_NODE_3320_length_162_cov_0.936000_g3264_i0 PRJNA657860 3320 162 0.936 1.51632 Carex littledalei 544730 Plants Plants 53.1 1.51e-6   NR KAF3333337.1 544730 g3264 i0 66.7 1.44444444444444 42 8 77.8 1 36 161 1 36 KAF3333337.1 aquaporin NIP1-1 [Carex littledalei] diamond 234 53.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei
32653906 32653906 PRJNA657860_P_NODE_2900_length_174_cov_1.124088_g2844_i0 PRJNA657860 2900 174 1.124088 1.95591312 Cyperaceae 4609 Plants Plants 109 5.6800000000000006e-27   NR KAF3329128.1 544730 g2844 i0 96.3 1.8448275862069 54 2 93.1 0 165 4 24 77 KAF3329128.1 peroxidase 31-like protein [Carex littledalei] diamond 321 110 0.990909090909091 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Carex Carex littledalei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;