RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA657343" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA657343 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26745106 26745106 PRJNA657343_P_NODE_41021_length_164_cov_2.243478_g40997_i0 PRJNA657343 41021 164 2.243478 3.67930392 Pseudomonadati 3379134 Bacteria Bacteria 79 2.18e-15   NR HWA87775.1 1913982 g40997 i0 70 3.58536585365854 50 15 91.5 0 151 2 11 60 HWA87775.1 phosphoenolpyruvate carboxykinase (GTP) [Opitutus sp.] diamond 588 79 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
27523711 27523711 PRJNA657343_P_NODE_4663_length_355_cov_2.810458_g4640_i0 PRJNA657343 4663 355 2.810458 9.9771259 Opitutaceae bacterium 2006848 Bacteria Bacteria 48.9 9.82e-4   NR MFA6288203.1 2006848 g4640 i0 35.2 0.912676056338028 108 67 90.4 3 34 354 1090 1195 MFA6288203.1 Ig-like domain-containing protein [Opitutaceae bacterium] diamond 324 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
28198805 28198805 PRJNA657343_P_NODE_28026_length_183_cov_3.208955_g28002_i0 PRJNA657343 28026 183 3.208955 5.87238765 root 1 Root_unresolved Root_unresolved 71.2 9.88e-13   NR MEW6160975.1 2026799 g28002 i0 65.3 2.37704918032787 49 17 80.3 0 181 35 273 321 MEW6160975.1 transaldolase [Verrucomicrobiota bacterium] diamond 435 71.6 0.994413407821229 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28641209 28641209 PRJNA657343_P_NODE_13087_length_243_cov_0.773196_g13063_i0 PRJNA657343 13087 243 0.773196 1.87886628 Verrucomicrobiota 74201 Bacteria Bacteria 122 1.07e-30   NR HEY5894404.1 2201154 g13063 i0 74.4 6.74074074074074 78 20 96.3 0 239 6 369 446 HEY5894404.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Chthoniobacterales bacterium] diamond 1638 123 0.991869918699187 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
31598540 31598540 PRJNA657343_P_NODE_17296_length_219_cov_1.200000_g17272_i0 PRJNA657343 17296 219 1.2 2.628 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 44.3 0.00787   NR MBX3744974.1 2499141 g17272 i0 45.9 0.835616438356164 61 32 82.2 1 23 202 83 143 MBX3744974.1 protein kinase [Verrucomicrobiia bacterium] diamond 183 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32294723 32294723 PRJNA657343_P_NODE_18679_length_213_cov_0.871951_g18655_i0 PRJNA657343 18679 213 0.871951 1.85725563 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 107 5.17e-26   NR RYD65414.1 2026800 g18655 i0 79.7 0.971830985915493 69 12 97.2 1 211 5 121 187 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 207 107 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;