RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA657343" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA657343 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28817939 28817939 PRJNA657343_S_NODE_28428_length_167_cov_1.762712_g28403_i0 PRJNA657343 28428 167 1.762712 2.94372904 Gammaretrovirus murleu 3428959 Viruses Viruses 108 7.480000000000001e-26   NR 8WUS_E 11801 g28403 i0 98.2 7.90419161676647 55 1 98.8 0 1 165 254 308 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 1320 108 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30302992 30302992 PRJNA657343_S_NODE_18032_length_213_cov_1.579268_g18007_i0 PRJNA657343 18032 213 1.579268 3.36384084 Gammaretrovirus murleu 3428959 Viruses Viruses 145 2.97e-39   NR 8WUS_E 11801 g18007 i0 100 6 71 0 100 0 1 213 192 262 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 1278 145 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
32021871 32021871 PRJNA657343_S_NODE_15538_length_230_cov_2.872928_g15513_i0 PRJNA657343 15538 230 2.872928 6.6077344 Gammaretrovirus 153135 Viruses Viruses 142 3.89e-37   NR NP_057933.2 11801 g15513 i0 98.7 14.8695652173913 76 1 99.1 0 228 1 1181 1256 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 3420 142 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;