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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA656952" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 7 ✖

bioproject 1

  • PRJNA656952 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27776472 27776472 PRJNA656952_P_NODE_38444_length_245_cov_0.895349_g38257_i0 PRJNA656952 38444 245 0.895349 2.19360505 Circoviridae sp. 1954248 Viruses Viruses 53.9 2.9e-6   NR AXH73276.1 1954248 g38257 i0 31.5 1.78775510204082 73 50 89.4 0 240 22 162 234 AXH73276.1 MAG: putative capsid protein [Circoviridae sp.] diamond 438 53.9 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Rohanvirales Nenyaviridae Galvornvirus Galvornvirus isengard
28609468 28609468 PRJNA656952_P_NODE_25807_length_274_cov_2.079602_g25620_i0 PRJNA656952 25807 274 2.079602 5.69810948 Gammaretrovirus 153135 Viruses Viruses 190 6.6e-54   NR AAA79247.1 11786 g25620 i0 98.9 10.9598540145985 91 1 99.6 0 274 2 235 325 AAA79247.1 putative reverse transcriptase [Murine leukemia virus] diamond 3003 190 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
28912714 28912714 PRJNA656952_P_NODE_5188_length_500_cov_0.918033_g5001_i0 PRJNA656952 5188 500 0.918033 4.590165 Circoviridae sp. 1954248 Viruses Viruses 104 6.3599999999999996e-24   NR AYP28888.1 1954248 g5001 i0 50 0.624 104 51 62.4 1 2 313 166 268 AYP28888.1 MAG: helicase [Circoviridae sp.] diamond 312 104 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Rohanvirales Nenyaviridae Galvornvirus Galvornvirus isengard
28925045 28925045 PRJNA656952_P_NODE_1908_length_713_cov_1.270312_g1765_i0 PRJNA656952 1908 713 1.270312 9.05732456 Gammaretrovirus 153135 Viruses Viruses 466 4.059999999999999e-153   NR NP_040333.1 11795 g1765 i0 97 4.9859747545582 237 7 99.7 0 713 3 497 733 NP_040333.1 RNA-dependent DNA polymerase, partial [Friend murine leukemia virus] diamond 3555 470 0.991489361702128 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
29039501 29039501 PRJNA656952_P_NODE_35588_length_248_cov_0.880000_g35401_i0 PRJNA656952 35588 248 0.88 2.1824 Caudoviricetes sp. 2832643 Viruses Viruses 54.3 2.15e-6   NR DAN86743.1 2832643 g35401 i0 40.3 0.870967741935484 72 41 84.7 1 38 247 115 186 DAN86743.1 MAG TPA: head to tail adaptor [Caudoviricetes sp.] diamond 216 54.3 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
30081144 30081144 PRJNA656952_P_NODE_26832_length_270_cov_1.329949_g26645_i0 PRJNA656952 26832 270 1.329949 3.5908623 Thermus phage Lalka27a 3289877 Viruses Viruses 43.9 0.0155   NR XKB89792.1 3289877 g26645 i0 37.3 1.52222222222222 83 45 85.6 3 255 25 126 207 XKB89792.1 hypothetical protein Lalka27a_9 [Thermus phage Lalka27a] diamond 411 43.9 1 Viruses               Thermus phage Lalka27a
31155210 31155210 PRJNA656952_P_NODE_32575_length_250_cov_0.870056_g32388_i0 PRJNA656952 32575 250 0.870056 2.17514 Streptomyces phage BRock 1913591 Viruses Viruses 116 1.4899999999999998e-30   NR YP_009831862.1 1913591 g32388 i0 63.9 0.996 83 29 99.6 1 250 2 70 151 YP_009831862.1 tail tube protein [Streptomyces phage BRock] diamond 249 116 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes     Borockvirus Borockvirus brock

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;