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contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA656952" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 15 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA656952 · 15 ✖

analysis 1

  • diamond · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
622532 622532 PRJNA656952_P_NODE_41441_length_243_cov_0.905882_g41254_i0 PRJNA656952 41441 243 0.905882 2.20129326 Terrimicrobium sacchariphilum 690879 Bacteria Bacteria 162 4.82e-45   NR WP_075077892.1 690879 g41254 i0 93.8 3 81 5 100 0 1 243 225 305 WP_075077892.1 biosynthetic-type acetolactate synthase large subunit [Terrimicrobium sacchariphilum] diamond 729 162 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sacchariphilum
14651328 14651328 PRJNA656952_P_NODE_33112_length_250_cov_0.870056_g32925_i0 PRJNA656952 33112 250 0.870056 2.17514 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 125 7.61e-33   NR MEQ1861824.1 2811408 g32925 i0 77.8 2.916 81 18 97.2 0 245 3 122 202 MEQ1861824.1 FtsH protease activity modulator HflK [Chthoniobacteraceae bacterium] diamond 729 125 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
26638074 26638074 PRJNA656952_P_NODE_25481_length_276_cov_1.305419_g25294_i0 PRJNA656952 25481 276 1.305419 3.60295644 Opitutaceae bacterium 2006848 Bacteria Bacteria 186 7.04e-53   NR HEY1108459.1 2006848 g25294 i0 96.7 2.96739130434783 91 3 98.9 0 274 2 75 165 HEY1108459.1 endonuclease/exonuclease/phosphatase family protein [Opitutaceae bacterium] diamond 819 186 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
26923183 26923183 PRJNA656952_P_NODE_20582_length_301_cov_1.057018_g20395_i0 PRJNA656952 20582 301 1.057018 3.18162418 Puniceicoccales bacterium 2478473 Bacteria Bacteria 44.7 0.0149   NR MDR2845148.1 2478473 g20395 i0 42.9 0.558139534883721 56 30 53.8 1 165 4 56 111 MDR2845148.1 ComEC/Rec2 family competence protein [Puniceicoccales bacterium] diamond 168 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales     Puniceicoccales bacterium
27314997 27314997 PRJNA656952_P_NODE_44063_length_241_cov_0.916667_g43876_i0 PRJNA656952 44063 241 0.916667 2.20916747 Opitutaceae 134623 Bacteria Bacteria 120 9.86e-30   NR MBA4137518.1 1913982 g43876 i0 76.3 2.98755186721992 80 19 99.6 0 240 1 217 296 MBA4137518.1 anion transporter [Opitutus sp.] diamond 720 121 0.991735537190083 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
27492205 27492205 PRJNA656952_P_NODE_38723_length_245_cov_0.895349_g38536_i0 PRJNA656952 38723 245 0.895349 2.19360505 Luteolibacter sp. SL25 1962973 Bacteria Bacteria 87 3.16e-18   NR WP_267674313.1 2995170 g38536 i0 93 0.52653061224489806 43 3 52.7 0 116 244 111 153 WP_267674313.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Luteolibacter sp. SL250] diamond 129 87 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
29304032 29304032 PRJNA656952_P_NODE_42869_length_242_cov_0.911243_g42682_i0 PRJNA656952 42869 242 0.911243 2.20520806 Candidatus Didemnitutus 2055839 Bacteria Bacteria 129 3.05e-34   NR MEI6108204.1 2026771 g42682 i0 72.5 6.94214876033058 80 22 99.2 0 2 241 203 282 MEI6108204.1 N-acetylmuramoyl-L-alanine amidase [Opitutia bacterium] diamond 1680 129 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
29323297 29323297 PRJNA656952_P_NODE_40949_length_243_cov_0.905882_g40762_i0 PRJNA656952 40949 243 0.905882 2.20129326 Prosthecobacter sp. 1965333 Bacteria Bacteria 67.8 1.35e-12   NR HEY1081890.1 1965333 g40762 i0 91.2 0.419753086419753 34 3 42 0 237 136 49 82 HEY1081890.1 hypothetical protein [Prosthecobacter sp.] diamond 102 67.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
29670372 29670372 PRJNA656952_P_NODE_31950_length_251_cov_0.865169_g31763_i0 PRJNA656952 31950 251 0.865169 2.17157419 Luteolibacter sp. SL25 1962973 Bacteria Bacteria 154 1.38e-41   NR WP_267670606.1 2995170 g31763 i0 85.5 0.99203187250996006 83 12 99.2 0 2 250 60 142 WP_267670606.1 FG-GAP repeat domain-containing protein [Luteolibacter sp. SL250] diamond 249 154 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
30776530 30776530 PRJNA656952_P_NODE_33254_length_250_cov_0.870056_g33067_i0 PRJNA656952 33254 250 0.870056 2.17514 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 135 1.19e-37   NR MEQ1858400.1 2811408 g33067 i0 84.1 0.984 82 13 98.4 0 248 3 116 197 MEQ1858400.1 hypothetical protein [Chthoniobacteraceae bacterium] diamond 246 135 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
30808047 30808047 PRJNA656952_P_NODE_41794_length_243_cov_0.905882_g41607_i0 PRJNA656952 41794 243 0.905882 2.20129326 Prosthecobacter sp. 1965333 Bacteria Bacteria 132 1.06e-36   NR HEY1048628.1 1965333 g41607 i0 100 0.790123456790123 64 0 79 0 51 242 1 64 HEY1048628.1 tRNA adenosine(34) deaminase TadA [Prosthecobacter sp.] diamond 192 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
30934519 30934519 PRJNA656952_P_NODE_35374_length_248_cov_0.880000_g35187_i0 PRJNA656952 35374 248 0.88 2.1824 Prosthecobacter sp. 1965333 Bacteria Bacteria 157 1.47e-42   NR HEY1080616.1 1965333 g35187 i0 90.2 0.991935483870968 82 8 99.2 0 1 246 447 528 HEY1080616.1 DUF1553 domain-containing protein [Prosthecobacter sp.] diamond 246 157 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
31693184 31693184 PRJNA656952_P_NODE_36397_length_247_cov_0.885057_g36210_i0 PRJNA656952 36397 247 0.885057 2.18609079 Opitutus sp. 1913982 Bacteria Bacteria 104 2.7e-26   NR MBA4138563.1 1913982 g36210 i0 65.1 1.0080971659919 83 27 98.4 1 3 245 34 116 MBA4138563.1 hypothetical protein [Opitutus sp.] diamond 249 104 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
31787935 31787935 PRJNA656952_P_NODE_31617_length_251_cov_0.865169_g31430_i0 PRJNA656952 31617 251 0.865169 2.17157419 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 147 3.57e-39   NR MBI5800124.1 2026799 g31430 i0 91.6 0.99203187250996006 83 7 99.2 0 2 250 60 142 MBI5800124.1 tetratricopeptide repeat-containing sensor histidine kinase [Verrucomicrobiota bacterium] diamond 249 147 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32041277 32041277 PRJNA656952_P_NODE_33118_length_250_cov_0.870056_g32931_i0 PRJNA656952 33118 250 0.870056 2.17514 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 119 3.67e-29   NR MFH1499404.1 2026799 g32931 i0 71.1 0.996 83 24 99.6 0 1 249 411 493 MFH1499404.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 249 119 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;