RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA656952" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA656952 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12101348 12101348 PRJNA656952_P_NODE_11030_length_379_cov_1.258170_g10843_i0 PRJNA656952 11030 379 1.25817 4.7684643 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 164 5.03e-44   NR MEA2552341.1 2682144 g10843 i0 63.5 3.75197889182058 126 45 98.9 1 2 376 65 190 MEA2552341.1 hypothetical protein [Fimbriimonadaceae bacterium] diamond 1422 164 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
30902873 30902873 PRJNA656952_P_NODE_34934_length_248_cov_0.880000_g34747_i0 PRJNA656952 34934 248 0.88 2.1824 Armatimonadota bacterium 2033014 Bacteria Bacteria 49.7 1.42e-4   NR GIV21048.1 2033014 g34747 i0 41.9 0.895161290322581 74 40 85.9 1 218 6 136 209 GIV21048.1 MAG: hypothetical protein KatS3mg023_2799 [Armatimonadota bacterium] diamond 222 49.7 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32389256 32389256 PRJNA656952_P_NODE_44119_length_241_cov_0.916667_g43932_i0 PRJNA656952 44119 241 0.916667 2.20916747 Armatimonadota bacterium 2033014 Bacteria Bacteria 58.2 1.33e-7   NR NCQ30037.1 2033014 g43932 i0 42 1.9792531120332 81 38 99.6 4 1 240 222 294 NCQ30037.1 hypothetical protein [Armatimonadota bacterium] diamond 477 58.2 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;