RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

35 rows where analysis = "diamond", bioproject = "PRJNA645397" and tax_phylum = "Streptophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 35 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA645397 · 35 ✖

analysis 1

  • diamond · 35 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6998192 6998192 PRJNA645397_P_NODE_3806_length_276_cov_1.070485_g3733_i0 PRJNA645397 3806 276 1.070485 2.9545386 Sorghum bicolor 4558 Plants Plants 85.9 1.71e-18   NR XP_021317968.1 4558 g3733 i0 84.4 1.95652173913043 45 7 48.9 0 274 140 146 190 XP_021317968.1 uncharacterized protein LOC110436099 [Sorghum bicolor] diamond 540 85.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Sorghum Sorghum bicolor
8272840 8272840 PRJNA645397_P_NODE_4527_length_249_cov_1.300000_g4454_i0 PRJNA645397 4527 249 1.3 3.237 Citrus sinensis 2711 Plants Plants 174 1.21e-51   NR KAH9722591.1 2711 g4454 i0 97.4 0.91566265060241 76 2 91.6 0 20 247 190 265 KAH9722591.1 putative ribonuclease H protein [Citrus sinensis] diamond 228 174 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
21022016 21022016 PRJNA645397_P_NODE_5257_length_229_cov_1.155556_g5184_i0 PRJNA645397 5257 229 1.155556 2.64622324 Poaceae 4479 Plants Plants 150 4.19e-40   NR KAK1606849.1 4521 g5184 i0 88.2 102.550218340611 76 9 99.6 0 228 1 620 695 KAK1606849.1 hypothetical protein QYE76_030522 [Lolium multiflorum] diamond 23484 150 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium multiflorum
22296733 22296733 PRJNA645397_P_NODE_4538_length_249_cov_0.860000_g4465_i0 PRJNA645397 4538 249 0.86 2.1414 root 1 Root_unresolved Root_unresolved 118 1.43e-30   NR RLN35274.1 4540 g4465 i0 65.4 1.92771084337349 81 28 97.6 0 248 6 152 232 RLN35274.1 uncharacterized protein C2845_PM03G28990 [Panicum miliaceum] diamond 480 119 0.991596638655462 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum miliaceum
25385586 25385586 PRJNA645397_P_NODE_5480_length_224_cov_1.085714_g5407_i0 PRJNA645397 5480 224 1.085714 2.43199936 Zea mays 4577 Plants Plants 148 1.81e-39   NR AQA29589.1 4577 g5407 i0 89.2 1.98214285714286 74 8 99.1 0 223 2 1041 1114 AQA29589.1 retroviral aspartyl protease [Zea mays] diamond 444 148 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
26954562 26954562 PRJNA645397_P_NODE_662_length_573_cov_1.650763_g612_i0 PRJNA645397 662 573 1.650763 9.45887199 Vitis vinifera 29760 Plants Plants 58.5 2.38e-6   NR CBI18644.3 29760 g612 i0 87.1 0.628272251308901 31 4 16.2 0 93 185 113 143 CBI18644.3 unnamed protein product, partial [Vitis vinifera] diamond 360 58.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
26986274 26986274 PRJNA645397_P_NODE_10022_length_166_cov_0.888889_g9949_i0 PRJNA645397 10022 166 0.888889 1.47555574 Oryza sativa Japonica Group 39947 Plants Plants 45.8 0.00105   NR ABA98063.1 39947 g9949 i0 81.5 0.487951807228916 27 5 48.8 0 122 42 259 285 ABA98063.1 retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group] diamond 81 45.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
27207504 27207504 PRJNA645397_P_NODE_11002_length_162_cov_0.920354_g10929_i0 PRJNA645397 11002 162 0.920354 1.49097348 Panicum miliaceum 4540 Plants Plants 58.9 5e-9   NR RLM69948.1 4540 g10929 i0 54 1.83333333333333 50 23 92.6 0 156 7 82 131 RLM69948.1 orf3 [Panicum miliaceum] diamond 297 58.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum miliaceum
27283272 27283272 PRJNA645397_P_NODE_9243_length_169_cov_0.866667_g9170_i0 PRJNA645397 9243 169 0.866667 1.46466723 Poaceae 4479 Plants Plants 58.5 3.65e-8   NR XP_051211363.1 4522 g9170 i0 50.9 16.8284023668639 53 26 94.1 0 166 8 364 416 XP_051211363.1 uncharacterized protein LOC127328831 [Lolium perenne] diamond 2844 58.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium perenne
27334346 27334346 PRJNA645397_P_NODE_10843_length_163_cov_0.912281_g10770_i0 PRJNA645397 10843 163 0.912281 1.48701803 Panicum virgatum 38727 Plants Plants 74.7 6.47e-14   NR XP_039798237.1 38727 g10770 i0 62.3 0.975460122699387 53 20 97.5 0 161 3 151 203 XP_039798237.1 uncharacterized protein LOC120663479 [Panicum virgatum] diamond 159 74.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum virgatum
27397535 27397535 PRJNA645397_P_NODE_10043_length_166_cov_0.888889_g9970_i0 PRJNA645397 10043 166 0.888889 1.47555574 Digitaria exilis 1010633 Plants Plants 43.5 0.00693   NR KAF8662485.1 1010633 g9970 i0 57.1 0.506024096385542 28 12 50.6 0 153 70 55 82 KAF8662485.1 hypothetical protein HU200_056074 [Digitaria exilis] diamond 84 43.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
27555040 27555040 PRJNA645397_P_NODE_10824_length_163_cov_0.912281_g10751_i0 PRJNA645397 10824 163 0.912281 1.48701803 Digitaria exilis 1010633 Plants Plants 89 6.32e-19   NR KAF8745039.1 1010633 g10751 i0 75.5 0.975460122699387 53 13 97.5 0 161 3 1300 1352 KAF8745039.1 hypothetical protein HU200_013449 [Digitaria exilis] diamond 159 89 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
27555041 27555041 PRJNA645397_P_NODE_9004_length_170_cov_1.421488_g8931_i0 PRJNA645397 9004 170 1.421488 2.4165296 Digitaria exilis 1010633 Plants Plants 60.1 1.03e-8   NR KAF8775871.1 1010633 g8931 i0 69 0.741176470588235 42 13 74.1 0 14 139 1 42 KAF8775871.1 hypothetical protein HU200_004133 [Digitaria exilis] diamond 126 60.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
28281234 28281234 PRJNA645397_P_NODE_10846_length_163_cov_0.912281_g10773_i0 PRJNA645397 10846 163 0.912281 1.48701803 Digitaria exilis 1010633 Plants Plants 62.8 9.38e-10   NR KAF8654848.1 1010633 g10773 i0 78.8 1.76687116564417 33 7 60.7 0 16 114 10 42 KAF8654848.1 hypothetical protein HU200_061427 [Digitaria exilis] diamond 288 62.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
28597315 28597315 PRJNA645397_P_NODE_9447_length_168_cov_0.873950_g9374_i0 PRJNA645397 9447 168 0.87395 1.468236 Digitaria exilis 1010633 Plants Plants 43.1 0.00971   NR KAF8720103.1 1010633 g9374 i0 74.1 0.482142857142857 27 7 48.2 0 83 3 295 321 KAF8720103.1 hypothetical protein HU200_024882 [Digitaria exilis] diamond 81 43.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
28628970 28628970 PRJNA645397_P_NODE_9967_length_166_cov_0.888889_g9894_i0 PRJNA645397 9967 166 0.888889 1.47555574 Digitaria exilis 1010633 Plants Plants 86.7 4.47e-18   NR KAF8762253.1 1010633 g9894 i0 80 0.993975903614458 55 8 99.4 1 165 1 822 873 KAF8762253.1 hypothetical protein HU200_009640 [Digitaria exilis] diamond 165 86.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
28692101 28692101 PRJNA645397_P_NODE_9567_length_168_cov_0.873950_g9494_i0 PRJNA645397 9567 168 0.87395 1.468236 Digitaria exilis 1010633 Plants Plants 43.5 0.00759   NR KAF8666369.1 1010633 g9494 i0 43.1 3.10714285714286 58 31 100 1 168 1 413 470 KAF8666369.1 hypothetical protein HU200_053472 [Digitaria exilis] diamond 522 43.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
28767256 28767256 PRJNA645397_P_NODE_9287_length_169_cov_0.866667_g9214_i0 PRJNA645397 9287 169 0.866667 1.46466723 Poaceae 4479 Plants Plants 77 1.14e-14   NR ACS88375.1 4505 g9214 i0 66.1 4.97041420118343 56 19 99.4 0 2 169 689 744 ACS88375.1 retrotransposon protein [Coix lacryma-jobi] diamond 840 77.4 0.994832041343669 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Coix Coix lacryma-jobi
29525209 29525209 PRJNA645397_P_NODE_8130_length_181_cov_0.856061_g8057_i0 PRJNA645397 8130 181 0.856061 1.54947041 Poaceae 4479 Plants Plants 79.7 1.51e-15   NR XP_025825265.1 206008 g8057 i0 66.7 6.94475138121547 60 20 99.4 0 181 2 337 396 XP_025825265.1 uncharacterized protein LOC112900644 [Panicum hallii] diamond 1257 80.1 0.995006242197254 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum hallii
29607162 29607162 PRJNA645397_P_NODE_9150_length_169_cov_0.866667_g9077_i0 PRJNA645397 9150 169 0.866667 1.46466723 Panicum virgatum 38727 Plants Plants 54.3 1.15e-6   NR KAG2632210.1 38727 g9077 i0 48 0.887573964497041 50 26 88.8 0 169 20 378 427 KAG2632210.1 hypothetical protein PVAP13_2NG070792 [Panicum virgatum] diamond 150 54.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum virgatum
29733592 29733592 PRJNA645397_P_NODE_10450_length_164_cov_0.904348_g10377_i0 PRJNA645397 10450 164 0.904348 1.48313072 Oryza sativa Japonica Group 39947 Plants Plants 46.2 1.18e-4   NR ABB47434.1 39947 g10377 i0 54.8 2.30487804878049 42 19 76.8 0 39 164 11 52 ABB47434.1 hypothetical protein LOC_Os10g24410 [Oryza sativa Japonica Group] diamond 378 46.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
29796886 29796886 PRJNA645397_P_NODE_9291_length_169_cov_0.866667_g9218_i0 PRJNA645397 9291 169 0.866667 1.46466723 Digitaria exilis 1010633 Plants Plants 77.8 2.55e-15   NR KAF8718003.1 1010633 g9218 i0 82 0.887573964497041 50 7 87 2 168 22 112 160 KAF8718003.1 hypothetical protein HU200_025469 [Digitaria exilis] diamond 150 77.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
29954972 29954972 PRJNA645397_P_NODE_4871_length_239_cov_1.094737_g4798_i0 PRJNA645397 4871 239 1.094737 2.61642143 Zea mays 4577 Plants Plants 80.9 1.34e-15   NR ABQ44355.1 4577 g4798 i0 55.1 3.90376569037657 78 33 97.9 1 237 4 199 274 ABQ44355.1 polyprotein [Zea mays] diamond 933 80.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
30018265 30018265 PRJNA645397_P_NODE_9191_length_169_cov_0.866667_g9118_i0 PRJNA645397 9191 169 0.866667 1.46466723 Oryza sativa Indica Group 39946 Plants Plants 74.7 3.72e-15   NR BBD82456.1 39946 g9118 i0 51.8 3.97633136094675 56 27 99.4 0 2 169 73 128 BBD82456.1 aminotransferase-like protein [Oryza sativa Indica Group] diamond 672 74.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
30239275 30239275 PRJNA645397_P_NODE_8252_length_179_cov_1.230769_g8179_i0 PRJNA645397 8252 179 1.230769 2.20307651 Zea mays 4577 Plants Plants 92 4.92e-20   NR ACF83349.1 4577 g8179 i0 74.6 1.9608938547486 59 15 98.9 0 177 1 159 217 ACF83349.1 unknown [Zea mays] diamond 351 92 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
30618296 30618296 PRJNA645397_P_NODE_4473_length_251_cov_1.029703_g4400_i0 PRJNA645397 4473 251 1.029703 2.58455453 Digitaria exilis 1010633 Plants Plants 52 2.26e-5   NR KAF8776072.1 1010633 g4400 i0 58.8 0.609561752988048 51 13 61 1 227 75 637 679 KAF8776072.1 hypothetical protein HU200_003908 [Digitaria exilis] diamond 153 52 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
30649779 30649779 PRJNA645397_P_NODE_11053_length_162_cov_0.920354_g10980_i0 PRJNA645397 11053 162 0.920354 1.49097348 Panicum hallii 206008 Plants Plants 42 0.0231   NR PVH32090.1 206008 g10980 i0 62.5 0.592592592592593 32 12 59.3 0 160 65 252 283 PVH32090.1 hypothetical protein PAHAL_9G308100 [Panicum hallii] diamond 96 42 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum hallii
30902832 30902832 PRJNA645397_P_NODE_10714_length_163_cov_0.912281_g10641_i0 PRJNA645397 10714 163 0.912281 1.48701803 Digitaria exilis 1010633 Plants Plants 42.4 0.0178   NR KAF8754437.1 1010633 g10641 i0 60.9 0.846625766871166 46 10 69.9 2 2 115 219 264 KAF8754437.1 hypothetical protein HU200_011473 [Digitaria exilis] diamond 138 42.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
30915198 30915198 PRJNA645397_P_NODE_5634_length_221_cov_0.854651_g5561_i0 PRJNA645397 5634 221 0.854651 1.88877871 Eukaryota 2759 Plants Plants 42.4 0.0379   NR XP_034578675.1 4556 g5561 i0 36.7 1.54751131221719 60 36 81.4 1 218 39 272 329 XP_034578675.1 uncharacterized protein LOC117842366 isoform X1 [Setaria viridis] diamond 342 42.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Setaria Setaria viridis
30978401 30978401 PRJNA645397_P_NODE_7834_length_185_cov_0.860294_g7761_i0 PRJNA645397 7834 185 0.860294 1.5915439 root 1 Root_unresolved Root_unresolved 100 7.859999999999999e-23   NR KAF8745039.1 1010633 g7761 i0 77 3.95675675675676 61 14 98.9 0 2 184 1864 1924 KAF8745039.1 hypothetical protein HU200_013449 [Digitaria exilis] diamond 732 100 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
31377032 31377032 PRJNA645397_P_NODE_7936_length_183_cov_1.462687_g7863_i0 PRJNA645397 7936 183 1.462687 2.67671721 Mangifera indica 29780 Plants Plants 51.2 1.67e-5   NR XP_044512329.1 29780 g7863 i0 64.7 0.557377049180328 34 12 55.7 0 113 12 490 523 XP_044512329.1 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Mangifera indica] diamond 102 51.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Anacardiaceae Mangifera Mangifera indica
31471966 31471966 PRJNA645397_P_NODE_9756_length_167_cov_0.881356_g9683_i0 PRJNA645397 9756 167 0.881356 1.47186452 Panicum virgatum 38727 Plants Plants 83.2 2.11e-17   NR KAG2549374.1 38727 g9683 i0 75.5 0.952095808383233 53 13 95.2 0 159 1 125 177 KAG2549374.1 hypothetical protein PVAP13_9KG269813 [Panicum virgatum] diamond 159 83.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum virgatum
31724723 31724723 PRJNA645397_P_NODE_9817_length_167_cov_0.872881_g9744_i0 PRJNA645397 9817 167 0.872881 1.45771127 Zea mays 4577 Plants Plants 91.7 7.79e-20   NR AAL59229.1 4577 g9744 i0 78.8 1.86826347305389 52 11 93.4 0 2 157 60 111 AAL59229.1 gag-pol [Zea mays] diamond 312 91.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
32041244 32041244 PRJNA645397_P_NODE_9238_length_169_cov_0.866667_g9165_i0 PRJNA645397 9238 169 0.866667 1.46466723 Digitaria exilis 1010633 Plants Plants 65.1 3.67e-12   NR KAF8649659.1 1010633 g9165 i0 80 1.24260355029586 35 7 62.1 0 162 58 34 68 KAF8649659.1 hypothetical protein HU200_064199 [Digitaria exilis] diamond 210 65.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Digitaria Digitaria exilis
32610493 32610493 PRJNA645397_P_NODE_9560_length_168_cov_0.873950_g9487_i0 PRJNA645397 9560 168 0.87395 1.468236 Oryza sativa Japonica Group 39947 Plants Plants 100 6.3e-23   NR AAO17007.1 39947 g9487 i0 78.6 1 56 12 100 0 1 168 572 627 AAO17007.1 Putative gag-pol polyprotein [Oryza sativa Japonica Group] diamond 168 100 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;