RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA645397" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA645397 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15187642 15187642 PRJNA645397_P_NODE_10792_length_163_cov_0.912281_g10719_i0 PRJNA645397 10792 163 0.912281 1.48701803 Pyrinomonas methylaliphatogenes 454194 Bacteria Bacteria 104 9.03e-26   NR WP_041975485.1 454194 g10719 i0 100 0.993865030674847 54 0 99.4 0 163 2 97 150 WP_041975485.1 Fe-S cluster assembly ATPase SufC [Pyrinomonas methylaliphatogenes] diamond 162 104 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae Pyrinomonas Pyrinomonas methylaliphatogenes
28281235 28281235 PRJNA645397_P_NODE_6766_length_199_cov_1.040000_g6693_i0 PRJNA645397 6766 199 1.04 2.0696 Terriglobia bacterium 2081523 Bacteria Bacteria 42 0.0391   NR HEV2248150.1 2081523 g6693 i0 60.6 0.49748743718593 33 12 49.7 1 60 158 1226 1257 HEV2248150.1 carboxypeptidase-like regulatory domain-containing protein [Terriglobia bacterium] diamond 99 42 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
29544274 29544274 PRJNA645397_P_NODE_9690_length_167_cov_0.881356_g9617_i0 PRJNA645397 9690 167 0.881356 1.47186452 Terriglobales bacterium 2282142 Bacteria Bacteria 67.8 1.94e-11   NR HUX65903.1 2282142 g9617 i0 63.6 0.988023952095808 55 20 98.8 0 3 167 386 440 HUX65903.1 CRISPR-associated endonuclease Cas1 [Terriglobales bacterium] diamond 165 67.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
30997665 30997665 PRJNA645397_S_NODE_1074_length_183_cov_1.164179_g1072_i0 PRJNA645397 1074 183 1.164179 2.13044757 Blastocatellia bacterium 2052146 Bacteria Bacteria 51.2 1.67e-5   NR MBA2335864.1 2052146 g1072 i0 50 0.885245901639344 54 26 86.9 1 14 172 465 518 MBA2335864.1 family 43 glycosylhydrolase [Blastocatellia bacterium] diamond 162 51.2 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;