RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA643700" and tax_phylum = "Uroviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Uroviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA643700 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28912635 28912635 PRJNA643700_P_NODE_348728_length_186_cov_1.138686_g347172_i0 PRJNA643700 348728 186 1.138686 2.11795596 Caudoviricetes sp. 2832643 Viruses Viruses 39.7 0.0255   NR DAM47919.1 2832643 g347172 i0 37 0.741935483870968 46 20 74.2 1 173 36 4 40 DAM47919.1 MAG TPA: hypothetical protein [Caudoviricetes sp.] diamond 138 39.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
29765242 29765242 PRJNA643700_P_NODE_389151_length_169_cov_0.866667_g387595_i0 PRJNA643700 389151 169 0.866667 1.46466723 uncultured Caudovirales phage 2100421 Viruses Viruses 40 0.0199   NR CAB4128393.1 2100421 g387595 i0 42.4 0.585798816568047 33 19 58.6 0 17 115 21 53 CAB4128393.1 hypothetical protein UFOVP112_26 [uncultured Caudovirales phage] diamond 99 40 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Peduoviridae Maltschvirus Maltschvirus maltsch
30081070 30081070 PRJNA643700_P_NODE_188432_length_289_cov_2.358333_g186876_i0 PRJNA643700 188432 289 2.358333 6.81558237 Caudoviricetes sp. 2832643 Viruses Viruses 41.2 0.0301   NR XOR96379.1 2832643 g186876 i0 44.4 0.560553633217993 54 29 56.1 1 64 225 6 58 XOR96379.1 MAG: hypothetical protein MSP1383_30 [Caudoviricetes sp.] diamond 162 41.2 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
32420913 32420913 PRJNA643700_P_NODE_347279_length_186_cov_3.262774_g345723_i0 PRJNA643700 347279 186 3.262774 6.06875964 Caudoviricetes sp. 2832643 Viruses Viruses 39.7 0.0484   NR DAN42177.1 2832643 g345723 i0 32.6 0.693548387096774 43 29 69.4 0 163 35 19 61 DAN42177.1 MAG TPA: hypothetical protein [Caudoviricetes sp.] diamond 129 39.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;