RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA643700" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA643700 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28502468 28502468 PRJNA643700_P_NODE_296627_length_211_cov_3.154321_g295071_i0 PRJNA643700 296627 211 3.154321 6.65561731 Spirochaetae bacterium HGW-Spirochaetae-1 2013832 Bacteria Bacteria 42.4 0.0331   NR PKL36258.1 2013832 g295071 i0 43.9 0.582938388625592 41 22 56.9 1 196 77 36 76 PKL36258.1 MAG: hypothetical protein CVV44_18775 [Spirochaetae bacterium HGW-Spirochaetae-1] diamond 123 42.4 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetae bacterium HGW-Spirochaetae-1
31851178 31851178 PRJNA643700_P_NODE_344737_length_188_cov_1.122302_g343181_i0 PRJNA643700 344737 188 1.122302 2.10992776 Leptospirales bacterium 2604146 Bacteria Bacteria 41.6 0.0454   NR MBL8018415.1 2604146 g343181 i0 48.4 0.49468085106383 31 16 49.5 0 56 148 40 70 MBL8018415.1 metallophosphoesterase [Leptospirales bacterium] diamond 93 41.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales     Leptospirales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;