RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA643700" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA643700 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27618494 27618494 PRJNA643700_P_NODE_350444_length_185_cov_1.529412_g348888_i0 PRJNA643700 350444 185 1.529412 2.8294122 Schistocephalus solidus 70667 Platyhelminthes Platyhelminthes 41.6 0.044   NR VDM04734.1 70667 g348888 i0 60 0.405405405405405 25 10 40.5 0 139 65 219 243 VDM04734.1 unnamed protein product, partial [Schistocephalus solidus] diamond 75 41.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Schistocephalus Schistocephalus solidus
30334451 30334451 PRJNA643700_P_NODE_226552_length_256_cov_2.072464_g224996_i0 PRJNA643700 226552 256 2.072464 5.30550784 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 47 1.52e-4   NR AAM80477.1 6182 g224996 i0 56.5 0.5390625 46 11 43.4 1 222 112 34 79 AAM80477.1 Hm1 protein [Schistosoma japonicum] diamond 138 47 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
32893709 32893709 PRJNA643700_P_NODE_81280_length_464_cov_3.233735_g79734_i0 PRJNA643700 81280 464 3.233735 15.0045304 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 57.8 1.36e-6   NR VZH90273.1 99802 g79734 i0 46 1.33836206896552 50 27 32.3 0 211 360 201 250 VZH90273.1 unnamed protein product [Spirometra erinaceieuropaei] diamond 621 57.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;