RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA643700" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA643700 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27366037 27366037 PRJNA643700_P_NODE_222663_length_259_cov_2.090476_g221107_i0 PRJNA643700 222663 259 2.090476 5.41433284 Hepatocystis sp. ex Piliocolobus tephrosceles 2600580 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.047   NR VWU48147.1 2600580 g221107 i0 53.3 0.347490347490348 30 14 34.7 0 86 175 942 971 VWU48147.1 CPW-WPC family protein, putative [Hepatocystis sp. ex Piliocolobus tephrosceles] diamond 90 42.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Hepatocystis Hepatocystis sp. ex Piliocolobus tephrosceles
30049497 30049497 PRJNA643700_P_NODE_243831_length_244_cov_1.066667_g242275_i0 PRJNA643700 243831 244 1.066667 2.60266748 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00399   NR XP_028535320.1 85471 g242275 i0 39.1 0.565573770491803 46 28 56.6 0 34 171 151 196 XP_028535320.1 conserved Plasmodium protein, unknown function [Plasmodium relictum] diamond 138 45.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
31060988 31060988 PRJNA643700_P_NODE_229075_length_254_cov_2.278049_g227519_i0 PRJNA643700 229075 254 2.278049 5.78624446 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0326   NR XP_028533660.1 85471 g227519 i0 35.6 0.696850393700787 59 35 69.7 1 189 13 2062 2117 XP_028533660.1 conserved Plasmodium protein, unknown function [Plasmodium relictum] diamond 177 43.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;