RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA643700" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA643700 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28912632 28912632 PRJNA643700_P_NODE_225748_length_257_cov_1.389423_g224192_i0 PRJNA643700 225748 257 1.389423 3.57081711 Methanobacteriota archaeon 2026739 Archaea Archaea 42.7 0.0443   NR MBI4394391.1 2026739 g224192 i0 35.9 0.455252918287938 39 25 45.5 0 176 60 250 288 MBI4394391.1 ATP-dependent DNA helicase [Methanobacteriota archaeon] diamond 117 42.7 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29304015 29304015 PRJNA643700_P_NODE_386429_length_169_cov_1.300000_g384873_i0 PRJNA643700 386429 169 1.3 2.197 Thermococcus 2263 Archaea Archaea 116 1.74e-28   NR WP_167728776.1 163002 g384873 i0 100 11.715976331360901 55 0 97.6 0 3 167 1753 1807 WP_167728776.1 DNA polymerase domain-containing protein [Thermococcus sp. 9N3] diamond 1980 116 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. 9N3
31281850 31281850 PRJNA643700_P_NODE_303575_length_208_cov_1.283019_g302019_i0 PRJNA643700 303575 208 1.283019 2.66867952 Thermoplasmatota archaeon 2806419 Archaea Archaea 42.4 0.0322   NR MCL4325535.1 2806419 g302019 i0 35.5 0.894230769230769 62 38 86.5 1 18 197 1152 1213 MCL4325535.1 protease pro-enzyme activation domain-containing protein [Thermoplasmatota archaeon] diamond 186 42.4 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;