RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA643700" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA643700 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28881212 28881212 PRJNA643700_P_NODE_146368_length_337_cov_3.604167_g144813_i0 PRJNA643700 146368 337 3.604167 12.14604279 Chlamydomonas reinhardtii 3055 Plants Plants 44.3 0.0278   NR XP_042921633.1 3055 g144813 i0 48.7 0.347181008902077 39 20 34.7 0 149 33 4 42 XP_042921633.1 uncharacterized protein CHLRE_09g413700v5 [Chlamydomonas reinhardtii] diamond 117 44.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
29291735 29291735 PRJNA643700_P_NODE_252689_length_238_cov_0.825397_g251133_i0 PRJNA643700 252689 238 0.825397 1.96444486 Volvox africanus 51714 Plants Plants 42.4 0.0496   NR GIL47893.1 51714 g251133 i0 42.9 1.41176470588235 56 31 70.6 1 178 11 162 216 GIL47893.1 hypothetical protein Vafri_4524 [Volvox africanus] diamond 336 42.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
32041207 32041207 PRJNA643700_P_NODE_241658_length_245_cov_1.969388_g240102_i0 PRJNA643700 241658 245 1.969388 4.8250006 Flabellia petiolata 189428 Plants Plants 43.9 0.0146   NR AYC63916.1 189428 g240102 i0 36.4 0.538775510204082 44 28 53.9 0 201 70 162 205 AYC63916.1 hypothetical protein [Flabellia petiolata] diamond 132 43.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Halimedaceae Flabellia Flabellia petiolata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;