RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA642647" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA642647 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28217996 28217996 PRJNA642647_P_NODE_5526_length_162_cov_1.120000_g5476_i0 PRJNA642647 5526 162 1.12 1.8144 Saprolegnia parasitica CBS 223.65 695850 SAR_Eukaryotes SAR_Eukaryotes 70.9 1.19e-13   NR XP_012202672.1 695850 g5476 i0 62.7 1.90740740740741 51 19 94.4 0 155 3 71 121 XP_012202672.1 translation initiation factor eIF-5A [Saprolegnia parasitica CBS 223.65] diamond 309 70.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
28723488 28723488 PRJNA642647_P_NODE_1367_length_300_cov_2.475285_g1317_i0 PRJNA642647 1367 300 2.475285 7.425855 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 135 9.54e-38   NR GLD98056.1 114742 g1317 i0 57.1 1.19 119 28 96 1 299 12 12 130 GLD98056.1 hypothetical protein PINS_up006753 [Pythium insidiosum] diamond 357 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
30460833 30460833 PRJNA642647_P_NODE_5233_length_166_cov_1.441860_g5183_i0 PRJNA642647 5233 166 1.44186 2.3934876 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.00328   NR KAE8917126.1 53985 g5183 i0 56 0.903614457831325 50 21 90.4 1 15 164 10 58 KAE8917126.1 hypothetical protein PF009_g32553 [Phytophthora fragariae] diamond 150 43.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;