RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA642647" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA642647 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26638005 26638005 PRJNA642647_P_NODE_4501_length_171_cov_2.462687_g4451_i0 PRJNA642647 4501 171 2.462687 4.21119477 Bacillariaceae sp. 3061772 SAR_Eukaryotes SAR_Eukaryotes 62.8 1.18e-9   NR KAL3908317.1 3061772 g4451 i0 55.4 2.94736842105263 56 24 98.2 1 171 4 166 220 KAL3908317.1 MAG: hypothetical protein SGARI_003117 [Bacillariaceae sp.] diamond 504 62.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae   Bacillariaceae sp.
32357827 32357827 PRJNA642647_P_NODE_6359_length_152_cov_1.217391_g6309_i0 PRJNA642647 6359 152 1.217391 1.85043432 Fistulifera solaris 1519565 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.015   NR GAX10430.1 1519565 g6309 i0 49 1.00657894736842 51 21 92.8 2 149 9 749 798 GAX10430.1 hypothetical protein FisN_21Lu161 [Fistulifera solaris] diamond 153 42.4 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Fistulifera Fistulifera solaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;