RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA642647" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA642647 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26732709 26732709 PRJNA642647_P_NODE_6121_length_154_cov_2.290598_g6071_i0 PRJNA642647 6121 154 2.290598 3.52752092 Haematococcus lacustris 44745 Plants Plants 63.5 6.9e-12   NR YP_009463609.1 44745 g6071 i0 84.2 0.74025974025974 38 6 74 0 41 154 3 40 YP_009463609.1 photosystem I P700 chlorophyll a apoprotein A1 [Haematococcus lacustris] diamond 114 63.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
27302653 27302653 PRJNA642647_P_NODE_3463_length_190_cov_2.411765_g3413_i0 PRJNA642647 3463 190 2.411765 4.5823535 Prototheca miyajii 2034260 Plants Plants 46.2 9.77e-4   NR YP_011059328.1 2034260 g3413 i0 78.6 0.978947368421053 28 6 44.2 0 85 2 28 55 YP_011059328.1 ribosomal protein S4 [Prototheca miyajii] diamond 186 46.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca miyajii
28439412 28439412 PRJNA642647_P_NODE_6506_length_151_cov_3.035088_g6456_i0 PRJNA642647 6506 151 3.035088 4.58298288 Tetraselmis suecica 270643 Plants Plants 75.9 9.83e-17   NR YP_010506648.1 270643 g6456 i0 88.4 0.854304635761589 43 5 85.4 0 131 3 1 43 YP_010506648.1 Z protein of photosystem II [Tetraselmis suecica] diamond 129 75.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis suecica
31535182 31535182 PRJNA642647_P_NODE_4956_length_166_cov_2.984496_g4906_i0 PRJNA642647 4956 166 2.984496 4.95426336 Hydrodictyon reticulatum 3107 Plants Plants 43.9 0.00525   NR YP_009364133.1 3107 g4906 i0 75 0.433734939759036 24 6 43.4 0 5 76 508 531 YP_009364133.1 hypothetical protein [Hydrodictyon reticulatum] diamond 72 43.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Hydrodictyon Hydrodictyon reticulatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;