RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA642647" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 4 ✖

bioproject 1

  • PRJNA642647 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30460832 30460832 PRJNA642647_P_NODE_4813_length_167_cov_1.769231_g4763_i0 PRJNA642647 4813 167 1.769231 2.95461577 Methanosarcina sp. 2213 Archaea Archaea 58.5 2.14e-8   NR HET8685962.1 2213 g4763 i0 43.6 0.988023952095808 55 29 95.2 1 161 3 125 179 HET8685962.1 hypothetical protein [Methanosarcina sp.] diamond 165 58.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
30567163 30567163 PRJNA642647_P_NODE_3993_length_180_cov_2.447552_g3943_i0 PRJNA642647 3993 180 2.447552 4.4055936000000004 root 1 Root_unresolved Root_unresolved 57.8 7.8e-8   NR HET8686064.1 2213 g3943 i0 67.6 1.85 37 12 61.7 0 112 2 279 315 HET8686064.1 hypothetical protein [Methanosarcina sp.] diamond 333 58.2 0.993127147766323 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
31535183 31535183 PRJNA642647_P_NODE_5376_length_164_cov_1.503937_g5326_i0 PRJNA642647 5376 164 1.503937 2.46645668 Methanosarcina sp. 2213 Archaea Archaea 80.1 8.55e-16   NR HET8689126.1 2213 g5326 i0 64.8 0.98780487804878 54 19 98.8 0 2 163 264 317 HET8689126.1 hypothetical protein [Methanosarcina sp.] diamond 162 80.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
32294643 32294643 PRJNA642647_P_NODE_6299_length_152_cov_2.982609_g6249_i0 PRJNA642647 6299 152 2.982609 4.53356568 Methanosarcina sp. 2213 Archaea Archaea 58.5 4.42e-9   NR HET8686574.1 2213 g6249 i0 53.1 0.967105263157895 49 23 96.7 0 5 151 83 131 HET8686574.1 hypothetical protein [Methanosarcina sp.] diamond 147 58.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;