RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA642647" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA642647 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26638005 26638005 PRJNA642647_P_NODE_4501_length_171_cov_2.462687_g4451_i0 PRJNA642647 4501 171 2.462687 4.21119477 Bacillariaceae sp. 3061772 SAR_Eukaryotes SAR_Eukaryotes 62.8 1.18e-9   NR KAL3908317.1 3061772 g4451 i0 55.4 2.94736842105263 56 24 98.2 1 171 4 166 220 KAL3908317.1 MAG: hypothetical protein SGARI_003117 [Bacillariaceae sp.] diamond 504 62.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae   Bacillariaceae sp.
28217996 28217996 PRJNA642647_P_NODE_5526_length_162_cov_1.120000_g5476_i0 PRJNA642647 5526 162 1.12 1.8144 Saprolegnia parasitica CBS 223.65 695850 SAR_Eukaryotes SAR_Eukaryotes 70.9 1.19e-13   NR XP_012202672.1 695850 g5476 i0 62.7 1.90740740740741 51 19 94.4 0 155 3 71 121 XP_012202672.1 translation initiation factor eIF-5A [Saprolegnia parasitica CBS 223.65] diamond 309 70.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
28723488 28723488 PRJNA642647_P_NODE_1367_length_300_cov_2.475285_g1317_i0 PRJNA642647 1367 300 2.475285 7.425855 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 135 9.54e-38   NR GLD98056.1 114742 g1317 i0 57.1 1.19 119 28 96 1 299 12 12 130 GLD98056.1 hypothetical protein PINS_up006753 [Pythium insidiosum] diamond 357 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
30460833 30460833 PRJNA642647_P_NODE_5233_length_166_cov_1.441860_g5183_i0 PRJNA642647 5233 166 1.44186 2.3934876 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.00328   NR KAE8917126.1 53985 g5183 i0 56 0.903614457831325 50 21 90.4 1 15 164 10 58 KAE8917126.1 hypothetical protein PF009_g32553 [Phytophthora fragariae] diamond 150 43.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
31787856 31787856 PRJNA642647_P_NODE_6477_length_151_cov_3.166667_g6427_i0 PRJNA642647 6477 151 3.166667 4.78166717 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.00423   NR KAJ1415980.1 483371 g6427 i0 73.1 0.516556291390728 26 7 51.7 0 71 148 439 464 KAJ1415980.1 P-loop containing nucleoside triphosphate hydrolase protein [Ochromonadaceae sp. CCMP2298] diamond 78 43.9 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
32009543 32009543 PRJNA642647_P_NODE_4818_length_167_cov_1.738462_g4768_i0 PRJNA642647 4818 167 1.738462 2.90323154 Symbiodinium microadriaticum 2951 SAR_Eukaryotes SAR_Eukaryotes 72.8 2.15e-13   NR CAE7860236.1 2951 g4768 i0 54.5 0.988023952095808 55 25 98.8 0 1 165 216 270 CAE7860236.1 unnamed protein product [Symbiodinium microadriaticum] diamond 165 72.8 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium microadriaticum
32357827 32357827 PRJNA642647_P_NODE_6359_length_152_cov_1.217391_g6309_i0 PRJNA642647 6359 152 1.217391 1.85043432 Fistulifera solaris 1519565 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.015   NR GAX10430.1 1519565 g6309 i0 49 1.00657894736842 51 21 92.8 2 149 9 749 798 GAX10430.1 hypothetical protein FisN_21Lu161 [Fistulifera solaris] diamond 153 42.4 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Fistulifera Fistulifera solaris
32610463 32610463 PRJNA642647_P_NODE_4580_length_170_cov_1.571429_g4530_i0 PRJNA642647 4580 170 1.571429 2.6714293 Aureococcus anophagefferens 44056 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.01e-9   NR XP_009037592.1 44056 g4530 i0 58.5 1.87058823529412 53 22 93.5 0 168 10 42 94 XP_009037592.1 hypothetical protein AURANDRAFT_27149, partial [Aureococcus anophagefferens] diamond 318 60.5 1 Eukaryota Sar     Pelagophyceae Pelagomonadales Pelagomonadaceae Aureococcus Aureococcus anophagefferens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;