RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA642647" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 2 ✖

bioproject 1

  • PRJNA642647 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30441246 30441246 PRJNA642647_P_NODE_6173_length_154_cov_1.025641_g6123_i0 PRJNA642647 6173 154 1.025641 1.57948714 Solanum 4107 Plants Plants 41.2 0.00583   NR TMX03370.1 4083 g6123 i0 55 3.11688311688312 40 18 77.9 0 148 29 11 50 TMX03370.1 hypothetical protein EJD97_016771, partial [Solanum chilense] diamond 480 41.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum chilense
30492064 30492064 PRJNA642647_P_NODE_3913_length_181_cov_3.395833_g3863_i0 PRJNA642647 3913 181 3.395833 6.14645773 Panicum virgatum 38727 Plants Plants 52 4.88e-6   NR KAG2640198.1 38727 g3863 i0 80.6 2.83425414364641 31 6 51.4 0 179 87 157 187 KAG2640198.1 hypothetical protein PVAP13_2KG057316 [Panicum virgatum] diamond 513 52 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Panicum Panicum virgatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;