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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA641991" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA641991 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28692050 28692050 PRJNA641991_S_NODE_14527_length_161_cov_1.410714_g14408_i0 PRJNA641991 14527 161 1.410714 2.27124954 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 70.9 2.03e-13   NR RHZ07776.1 112090 g14408 i0 56.6 4.93788819875776 53 23 98.8 0 161 3 92 144 RHZ07776.1 hypothetical protein DYB31_012338, partial [Aphanomyces astaci] diamond 795 70.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
28735752 28735752 PRJNA641991_S_NODE_14567_length_161_cov_1.366071_g14448_i0 PRJNA641991 14567 161 1.366071 2.19937431 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 69.3 4.95e-12   NR XP_024573891.1 4781 g14448 i0 78 38.1614906832298 41 9 76.4 0 159 37 108 148 XP_024573891.1 60s ribosomal protein l27a [Plasmopara halstedii] diamond 6144 69.7 0.994261119081779 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
28767240 28767240 PRJNA641991_S_NODE_13107_length_165_cov_0.879310_g12988_i0 PRJNA641991 13107 165 0.87931 1.4508615 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 69.7 3.84e-12   NR XP_067785475.1 4785 g12988 i0 63 5.89090909090909 54 14 98.2 1 2 163 362 409 XP_067785475.1 methylmalonate-semialdehyde dehydrogenase (acylating) [Phytophthora cinnamomi] diamond 972 69.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
30429196 30429196 PRJNA641991_S_NODE_9853_length_181_cov_1.431818_g9734_i0 PRJNA641991 9853 181 1.431818 2.59159058 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 85.9 9.91e-18   NR RHY32367.1 157072 g9734 i0 78 2.93370165745856 59 13 97.8 0 3 179 168 226 RHY32367.1 hypothetical protein DYB32_003166 [Aphanomyces invadans] diamond 531 85.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
31009791 31009791 PRJNA641991_S_NODE_14794_length_161_cov_0.910714_g14675_i0 PRJNA641991 14794 161 0.910714 1.46624954 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 72 3.62e-14   NR KAF0744732.1 100861 g14675 i0 69.8 5.92546583850932 53 16 98.8 0 159 1 22 74 KAF0744732.1 hypothetical protein Ae201684_001188 [Aphanomyces euteiches] diamond 954 72.4 0.994475138121547 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
32704759 32704759 PRJNA641991_P_NODE_2800_length_181_cov_1.545455_g2759_i0 PRJNA641991 2800 181 1.545455 2.79727355 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 65.9 4.61e-11   NR RHX96559.1 112090 g2759 i0 52.6 4.72375690607735 57 27 94.5 0 3 173 170 226 RHX96559.1 hypothetical protein DYB36_013739, partial [Aphanomyces astaci] diamond 855 65.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;