RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA641991" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA641991 · 22 ✖

analysis 1

  • diamond · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3168609 3168609 PRJNA641991_S_NODE_1203_length_481_cov_5.206019_g1084_i0 PRJNA641991 1203 481 5.206019 25.04095139 Branchiostoma belcheri 7741 Chordata Chordata 251 8.48e-83   NR KAI8508455.1 7741 g1084 i0 95.3 46.5280665280665 129 6 80.5 0 3 389 35 163 KAI8508455.1 Ubiquitin-60S ribosomal protein L40 [Branchiostoma belcheri] diamond 22380 252 0.996031746031746 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
4445423 4445423 PRJNA641991_P_NODE_2284_length_201_cov_1.644737_g2243_i0 PRJNA641991 2284 201 1.644737 3.30592137 root 1 Root_unresolved Root_unresolved 108 2.38e-28   NR KAE8577506.1 8364 g2243 i0 90.7 53.1940298507463 54 5 80.6 0 201 40 80 133 KAE8577506.1 hypothetical protein XENTR_v10004594 [Xenopus tropicalis] diamond 10692 108 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
12097218 12097218 PRJNA641991_S_NODE_9430_length_184_cov_1.888889_g9311_i0 PRJNA641991 9430 184 1.888889 3.47555576 Styela clava 7725 Chordata Chordata 123 8e-31   NR XP_039264901.1 7725 g9311 i0 100 8.95108695652174 61 0 99.5 0 183 1 396 456 XP_039264901.1 putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 [Styela clava] diamond 1647 123 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
27049736 27049736 PRJNA641991_S_NODE_12462_length_166_cov_0.871795_g12343_i0 PRJNA641991 12462 166 0.871795 1.4471797 Myodes glareolus 447135 Chordata Chordata 45.8 0.00102   NR KAK7798099.1 447135 g12343 i0 54 4.62650602409639 50 23 90.4 0 152 3 151 200 KAK7798099.1 hypothetical protein U0070_011690 [Myodes glareolus] diamond 768 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Myodes Myodes glareolus
27409824 27409824 PRJNA641991_S_NODE_12903_length_165_cov_0.879310_g12784_i0 PRJNA641991 12903 165 0.87931 1.4508615 Metazoa 33208 Chordata Chordata 112 4.87e-27   NR XP_006169838.1 246437 g12784 i0 94.4 51.0545454545455 54 3 98.2 0 163 2 534 587 XP_006169838.1 urocanate hydratase [Tupaia chinensis] diamond 8424 112 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Scandentia Tupaiidae Tupaia Tupaia chinensis
27694084 27694084 PRJNA641991_S_NODE_5304_length_234_cov_1.929730_g5185_i0 PRJNA641991 5304 234 1.92973 4.5155682 Metazoa 33208 Chordata Chordata 45.4 0.00369   NR XP_067962748.1 7769 g5185 i0 60 1.20512820512821 40 16 51.3 0 213 94 306 345 XP_067962748.1 large ribosomal subunit protein uL4 [Myxine glutinosa] diamond 282 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
28028908 28028908 PRJNA641991_S_NODE_105_length_1335_cov_4.807154_g70_i0 PRJNA641991 105 1335 4.807154 64.1755059 Hyperolius riggenbachi 752182 Chordata Chordata 154 1.21e-38   NR XP_068130257.1 752182 g70 i0 29.9 0.759550561797753 338 229 75.1 4 1294 293 33 366 XP_068130257.1 uncharacterized protein [Hyperolius riggenbachi] diamond 1014 154 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
28281170 28281170 PRJNA641991_S_NODE_10846_length_174_cov_0.944000_g10727_i0 PRJNA641991 10846 174 0.944 1.64256 Myotis myotis 51298 Chordata Chordata 44.3 0.00411   NR KAF6319703.1 51298 g10727 i0 51 0.844827586206897 49 24 84.5 0 6 152 101 149 KAF6319703.1 hypothetical protein mMyoMyo1_008442 [Myotis myotis] diamond 147 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis
28534171 28534171 PRJNA641991_P_NODE_307_length_667_cov_4.150485_g272_i0 PRJNA641991 307 667 4.150485 27.68373495 Hyperolius riggenbachi 752182 Chordata Chordata 82 3.07e-14   NR XP_068130257.1 752182 g272 i0 35 0.52623688155922 117 76 52.6 0 619 269 250 366 XP_068130257.1 uncharacterized protein [Hyperolius riggenbachi] diamond 351 82 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
28641169 28641169 PRJNA641991_S_NODE_13027_length_165_cov_0.879310_g12908_i0 PRJNA641991 13027 165 0.87931 1.4508615 root 1 Root_unresolved Root_unresolved 99.4 3.169999999999999e-23   NR XP_035662816.1 7739 g12908 i0 83.3 19.6363636363636 54 9 98.2 0 163 2 185 238 XP_035662816.1 transaldolase-like [Branchiostoma floridae] diamond 3240 100 0.994 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
28692062 28692062 PRJNA641991_S_NODE_9147_length_187_cov_0.949275_g9028_i0 PRJNA641991 9147 187 0.949275 1.77514425 Dromiciops gliroides 33562 Chordata Chordata 57 5.74e-8   NR XP_043835392.1 33562 g9028 i0 59.3 1.89304812834225 59 24 94.7 0 11 187 99 157 XP_043835392.1 40S ribosomal protein S14-like [Dromiciops gliroides] diamond 354 57 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Microbiotheria Microbiotheriidae Dromiciops Dromiciops gliroides
28817822 28817822 PRJNA641991_S_NODE_11968_length_167_cov_1.084746_g11849_i0 PRJNA641991 11968 167 1.084746 1.81152582 Clavelina lepadiformis 159417 Chordata Chordata 49.3 6.5e-5   NR CAK8689709.1 159417 g11849 i0 52.7 1.97604790419162 55 26 98.8 0 165 1 716 770 CAK8689709.1 unnamed protein product [Clavelina lepadiformis] diamond 330 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
29355029 29355029 PRJNA641991_S_NODE_6329_length_218_cov_0.840237_g6210_i0 PRJNA641991 6329 218 0.840237 1.83171666 Naja naja 35670 Chordata Chordata 67.4 5.4e-11   NR KAG8126575.1 35670 g6210 i0 57.1 0.963302752293578 70 30 96.3 0 7 216 158 227 KAG8126575.1 hypothetical protein E2320_021724, partial [Naja naja] diamond 210 67.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Naja Naja naja
29777550 29777550 PRJNA641991_S_NODE_11951_length_167_cov_1.169492_g11832_i0 PRJNA641991 11951 167 1.169492 1.95305164 Chordata 7711 Chordata Chordata 57.4 8.98e-8   NR GCB81378.1 75743 g11832 i0 56.4 21.7365269461078 55 24 98.8 0 166 2 13 67 GCB81378.1 hypothetical protein [Scyliorhinus torazame] diamond 3630 57.8 0.993079584775087 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus torazame
30554983 30554983 PRJNA641991_S_NODE_13993_length_163_cov_0.885965_g13874_i0 PRJNA641991 13993 163 0.885965 1.44412295 Tyto alba 56313 Chordata Chordata 42.7 0.0123   NR KFV41833.1 56313 g13874 i0 39.2 0.938650306748466 51 31 93.9 0 161 9 377 427 KFV41833.1 Leucine-rich repeat-containing protein 40, partial [Tyto alba] diamond 153 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Strigiformes Tytonidae Tyto Tyto alba
31610665 31610665 PRJNA641991_S_NODE_14756_length_161_cov_0.910714_g14637_i0 PRJNA641991 14756 161 0.910714 1.46624954 Mammalia 40674 Chordata Chordata 60.8 4.95e-9   NR KAJ8778150.1 9764 g14637 i0 59.6 35.7763975155279 52 20 95 1 6 158 74 125 KAJ8778150.1 hypothetical protein J1605_013866, partial [Eschrichtius robustus] diamond 5760 61.2 0.993464052287582 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
32148426 32148426 PRJNA641991_S_NODE_10538_length_176_cov_1.196850_g10419_i0 PRJNA641991 10538 176 1.19685 2.106456 Metazoa 33208 Chordata Chordata 50.1 3.93e-5   NR XP_035675612.1 7739 g10419 i0 91.7 3.68181818181818 24 2 40.9 0 174 103 556 579 XP_035675612.1 protein mono-ADP-ribosyltransferase PARP3-like [Branchiostoma floridae] diamond 648 50.4 0.994047619047619 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32231197 32231197 PRJNA641991_S_NODE_13278_length_164_cov_0.886957_g13159_i0 PRJNA641991 13278 164 0.886957 1.45460948 Monodon monoceros 40151 Chordata Chordata 53.9 1.05e-7   NR TKC37834.1 40151 g13159 i0 59.2 3.58536585365854 49 20 89.6 0 153 7 18 66 TKC37834.1 hypothetical protein EI555_012850 [Monodon monoceros] diamond 588 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Monodontidae Monodon Monodon monoceros
32370039 32370039 PRJNA641991_S_NODE_13279_length_164_cov_0.886957_g13160_i0 PRJNA641991 13279 164 0.886957 1.45460948 Chordata 7711 Chordata Chordata 41.6 0.0306   NR XP_055512776.1 7782 g13160 i0 55.6 189.658536585366 54 24 98.8 0 3 164 45 98 XP_055512776.1 60S ribosomal protein L19 [Leucoraja erinaceus] diamond 31104 42 0.990476190476191 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
32547625 32547625 PRJNA641991_S_NODE_14879_length_161_cov_0.910714_g14760_i0 PRJNA641991 14879 161 0.910714 1.46624954 Rousettus aegyptiacus 9407 Chordata Chordata 71.2 4.79e-13   NR KAF6442538.1 9407 g14760 i0 63.8 0.875776397515528 47 17 87.6 0 6 146 5 51 KAF6442538.1 transducin beta like 3 [Rousettus aegyptiacus] diamond 141 71.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
32579153 32579153 PRJNA641991_S_NODE_14699_length_161_cov_0.910714_g14580_i0 PRJNA641991 14699 161 0.910714 1.46624954 Hyla sarda 327740 Chordata Chordata 49.3 5.94e-5   NR XP_056400904.1 327740 g14580 i0 52.5 0.745341614906832 40 19 74.5 0 1 120 572 611 XP_056400904.1 heat shock-related 70 kDa protein 2 [Hyla sarda] diamond 120 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
32641666 32641666 PRJNA641991_S_NODE_6020_length_222_cov_1.872832_g5901_i0 PRJNA641991 6020 222 1.872832 4.15768704 Bufotes viridis 30338 Chordata Chordata 46.2 0.00162   NR CAK8629749.1 30338 g5901 i0 50 0.486486486486487 36 18 48.6 0 32 139 329 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 108 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;